Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28490

Experiment: m.b. syringaldehyde 1.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. syringaldehyde 1.25 mM
2,980,753	+		PGA1_c28480	0.80	-0.7
2,980,753	+		PGA1_c28480	0.80	-0.4
2,980,761	-		PGA1_c28480	0.80	-0.6
2,980,785	+		PGA1_c28480	0.81	+0.2
2,980,785	+		PGA1_c28480	0.81	+0.0
2,980,785	+		PGA1_c28480	0.81	-0.6
2,980,793	-		PGA1_c28480	0.81	-1.0
2,980,798	-		PGA1_c28480	0.81	+0.0
2,980,808	-		PGA1_c28480	0.82	-0.6
2,980,813	+		PGA1_c28480	0.82	-1.6
2,980,813	+		PGA1_c28480	0.82	-1.6
2,980,813	-		PGA1_c28480	0.82	-0.4
2,980,818	-		PGA1_c28480	0.82	-0.2
2,980,853	-		PGA1_c28480	0.83	-0.3
2,980,857	+		PGA1_c28480	0.83	-2.3
2,980,857	+		PGA1_c28480	0.83	+1.0
2,980,858	+		PGA1_c28480	0.83	+0.0
2,980,858	+		PGA1_c28480	0.83	-1.8
2,980,865	-		PGA1_c28480	0.83	+0.4
2,980,866	-		PGA1_c28480	0.83	+1.0
2,980,866	-		PGA1_c28480	0.83	-0.4
2,980,866	-		PGA1_c28480	0.83	-0.3
2,980,866	-		PGA1_c28480	0.83	+2.6
2,980,866	-		PGA1_c28480	0.83	-1.3
2,980,866	-		PGA1_c28480	0.83	+0.0
2,980,866	-		PGA1_c28480	0.83	+0.5
2,980,875	+		PGA1_c28480	0.84	-0.7
2,980,875	+		PGA1_c28480	0.84	+1.3
2,980,875	+		PGA1_c28480	0.84	-0.4
2,980,882	-		PGA1_c28480	0.84	-0.3
2,980,883	-		PGA1_c28480	0.84	-1.0
2,980,918	+		PGA1_c28480	0.85	-1.1
2,980,926	-		PGA1_c28480	0.85	-0.0
2,980,926	-		PGA1_c28480	0.85	+1.1
2,980,966	+		PGA1_c28480	0.87	+0.0
2,980,974	-		PGA1_c28480	0.87	+0.4
2,980,974	-		PGA1_c28480	0.87	+0.9
2,980,974	-		PGA1_c28480	0.87	+0.5
2,980,974	-		PGA1_c28480	0.87	-0.7
2,980,990	-		PGA1_c28480	0.87	+1.0
2,981,108	+				+1.0
2,981,109	-				+1.0
2,981,119	+				-0.2
2,981,127	-				+0.2
2,981,160	-				+1.2
2,981,209	+				+0.8
2,981,209	+				-0.6
2,981,217	-				+0.5
2,981,297	+				-1.3
2,981,386	+				+1.0
2,981,418	+				-1.3
2,981,564	-				+0.3
2,981,564	-				-0.6
2,981,667	+				+0.3
2,981,691	+				+0.0
2,981,694	-				+1.0
2,981,694	-				+1.3
2,981,700	-				+0.4
2,981,749	+				-0.3
2,981,787	-				-2.0
2,981,813	+				+1.0
2,981,835	+				+1.0
2,981,835	+				-1.6
2,981,835	+				+2.0
2,981,835	+				-1.3
2,981,850	+				+1.5
2,981,855	+				-0.2
2,981,856	-				-1.0
2,981,894	-				-0.3
2,982,045	+				-1.0
2,982,063	+				+1.0
2,982,128	-				+0.0
2,982,221	-		PGA1_c28490	0.11	-2.3
2,982,239	-		PGA1_c28490	0.12	-0.2
2,982,266	-		PGA1_c28490	0.12	+1.3
2,982,282	+		PGA1_c28490	0.13	+0.0
2,982,426	+		PGA1_c28490	0.16	-0.3
2,982,434	-		PGA1_c28490	0.16	-1.7
2,982,472	-		PGA1_c28490	0.17	+2.0
2,982,481	-		PGA1_c28490	0.17	-2.0
2,982,483	+		PGA1_c28490	0.17	-2.2
2,982,623	+		PGA1_c28490	0.20	-1.0
2,982,631	-		PGA1_c28490	0.20	+1.0
2,982,640	+		PGA1_c28490	0.21	-1.8
2,982,660	+		PGA1_c28490	0.21	-1.3
2,982,926	-		PGA1_c28490	0.27	+0.6
2,982,936	-		PGA1_c28490	0.27	-1.2
2,982,972	-		PGA1_c28490	0.28	-0.6
2,983,000	-		PGA1_c28490	0.29	+1.1
2,983,022	-		PGA1_c28490	0.29	-0.6
2,983,035	+		PGA1_c28490	0.30	-2.2
2,983,035	+		PGA1_c28490	0.30	+1.0
2,983,043	-		PGA1_c28490	0.30	-0.2
2,983,043	-		PGA1_c28490	0.30	+1.4
2,983,043	-		PGA1_c28490	0.30	-1.2
2,983,043	-		PGA1_c28490	0.30	-0.1
2,983,043	-		PGA1_c28490	0.30	-1.0
2,983,043	-		PGA1_c28490	0.30	-2.0
2,983,043	-		PGA1_c28490	0.30	+0.5
2,983,043	-		PGA1_c28490	0.30	-1.8
2,983,043	-		PGA1_c28490	0.30	+0.3
2,983,043	-		PGA1_c28490	0.30	+2.0
2,983,064	-		PGA1_c28490	0.30	-1.6
2,983,064	-		PGA1_c28490	0.30	-0.8
2,983,074	+		PGA1_c28490	0.31	-0.7
2,983,074	+		PGA1_c28490	0.31	-1.8
2,983,101	-		PGA1_c28490	0.31	+1.6
2,983,117	+		PGA1_c28490	0.32	-0.6
2,983,166	-		PGA1_c28490	0.33	-0.6
2,983,183	+		PGA1_c28490	0.33	-2.0
2,983,217	+		PGA1_c28490	0.34	-0.6
2,983,225	-		PGA1_c28490	0.34	+1.0
2,983,232	-		PGA1_c28490	0.34	-0.7
2,983,279	+		PGA1_c28490	0.35	-1.3
2,983,281	-		PGA1_c28490	0.35	-0.2
2,983,281	-		PGA1_c28490	0.35	+0.2
2,983,281	-		PGA1_c28490	0.35	+2.6
2,983,287	-		PGA1_c28490	0.35	-0.6
2,983,297	-		PGA1_c28490	0.36	+2.6
2,983,445	+		PGA1_c28490	0.39	+1.2
2,983,445	+		PGA1_c28490	0.39	-0.7
2,983,445	+		PGA1_c28490	0.39	+1.0
2,983,445	+		PGA1_c28490	0.39	+1.6
2,983,445	+		PGA1_c28490	0.39	-1.3
2,983,453	-		PGA1_c28490	0.39	-2.9
2,983,453	-		PGA1_c28490	0.39	+0.5
2,983,453	-		PGA1_c28490	0.39	+1.0
2,983,551	+		PGA1_c28490	0.41	-2.2
2,983,649	+		PGA1_c28490	0.44	-1.0
2,983,649	-		PGA1_c28490	0.44	-1.6
2,983,662	+		PGA1_c28490	0.44	-1.6
2,983,670	-		PGA1_c28490	0.44	-1.6
2,983,765	-		PGA1_c28490	0.46	+0.6
2,983,780	-		PGA1_c28490	0.47	-1.8
2,983,782	+		PGA1_c28490	0.47	+1.4
2,983,785	-		PGA1_c28490	0.47	+1.0
2,983,841	+		PGA1_c28490	0.48	+0.0
2,983,841	+		PGA1_c28490	0.48	-0.8
2,983,841	+		PGA1_c28490	0.48	+0.0
2,983,849	-		PGA1_c28490	0.48	-1.2
2,983,849	-		PGA1_c28490	0.48	+0.0
2,983,897	+		PGA1_c28490	0.49	+0.0
2,983,897	+		PGA1_c28490	0.49	-0.9
2,983,905	-		PGA1_c28490	0.49	-1.3
2,983,905	-		PGA1_c28490	0.49	-0.6
2,983,905	-		PGA1_c28490	0.49	-1.0
2,983,905	-		PGA1_c28490	0.49	-0.8
2,983,905	-		PGA1_c28490	0.49	-2.6
2,983,905	-		PGA1_c28490	0.49	-0.6
2,983,934	+		PGA1_c28490	0.50	-2.2
2,983,934	+		PGA1_c28490	0.50	-2.6
2,983,942	-		PGA1_c28490	0.50	-0.8
2,983,965	+		PGA1_c28490	0.51	+1.0
2,984,058	+		PGA1_c28490	0.53	-1.0
2,984,162	-		PGA1_c28490	0.55	+0.0
2,984,242	+		PGA1_c28490	0.57	+1.6
2,984,331	+		PGA1_c28490	0.59	-1.6
2,984,339	-		PGA1_c28490	0.59	+2.0
2,984,356	+		PGA1_c28490	0.60	-1.3
2,984,441	+		PGA1_c28490	0.62	-2.6
2,984,449	-		PGA1_c28490	0.62	+2.0
2,984,490	-		PGA1_c28490	0.63	-1.6
2,984,540	-		PGA1_c28490	0.64	-1.8
2,984,555	-		PGA1_c28490	0.64	+0.7
2,984,719	-		PGA1_c28490	0.68	-0.2
2,984,729	-		PGA1_c28490	0.68	-0.6
2,984,785	+		PGA1_c28490	0.70	-2.0
2,984,803	+		PGA1_c28490	0.70	-1.3
2,984,803	+		PGA1_c28490	0.70	-1.0
2,984,803	+		PGA1_c28490	0.70	-1.0
2,984,803	+		PGA1_c28490	0.70	-0.2
2,984,811	-		PGA1_c28490	0.70	+1.0
2,984,850	-		PGA1_c28490	0.71	+0.3
2,984,903	-		PGA1_c28490	0.72	+0.3
2,984,923	-		PGA1_c28490	0.73	+0.8
2,984,967	+		PGA1_c28490	0.74	-1.8
2,985,021	-		PGA1_c28490	0.75	-1.8
2,985,126	+		PGA1_c28490	0.77	+0.7
2,985,126	+		PGA1_c28490	0.77	-2.0
2,985,167	+		PGA1_c28490	0.78	+2.1
2,985,245	+		PGA1_c28490	0.80	+0.1
2,985,325	+		PGA1_c28490	0.82	-0.9
2,985,325	+		PGA1_c28490	0.82	-0.3
2,985,326	+		PGA1_c28490	0.82	-0.6
2,985,327	+		PGA1_c28490	0.82	+0.6
2,985,335	-		PGA1_c28490	0.82	+1.4
2,985,369	-		PGA1_c28490	0.83	+0.0
2,985,482	-		PGA1_c28490	0.85	-0.3
2,985,499	+		PGA1_c28490	0.86	-1.4
2,985,500	-		PGA1_c28490	0.86	+2.0
2,985,500	-		PGA1_c28490	0.86	+0.0
2,985,509	-		PGA1_c28490	0.86	+0.3
2,985,551	+		PGA1_c28490	0.87	-0.3
2,985,559	-		PGA1_c28490	0.87	-1.3
2,985,559	-		PGA1_c28490	0.87	+2.6
2,985,672	-		PGA1_c28490	0.90	+0.0
2,985,706	-				+1.3
2,985,785	+				-0.5
2,985,887	+				-0.6
2,985,908	-				-1.1
2,985,939	-				+0.0
2,985,939	-				+0.0
2,985,942	+				-1.3
2,986,142	+				-1.3
2,986,142	+				+0.3
2,986,207	-				+0.6
2,986,215	-				+0.6
2,986,219	+				-1.8
2,986,222	-				-0.7
2,986,227	-				-0.6
2,986,326	-				+0.7
2,986,364	+				-2.9
2,986,364	-				+2.0
2,986,364	-				+0.2
2,986,371	+				+0.0
2,986,383	+				+0.0
2,986,383	+				+1.0
2,986,396	-				-1.2
2,986,418	+				+0.8
2,986,418	+				-0.4
2,986,426	-				+0.3
2,986,426	-				-1.0
2,986,426	-				+0.0
2,986,431	-				+0.1
2,986,512	-				-0.5
2,986,512	-				-1.0
2,986,537	-				-1.0
2,986,567	+				+0.1
2,986,567	+				+0.0
2,986,576	+				+0.1
2,986,578	+				+0.1
2,986,649	+				-0.1
2,986,651	+				-1.6
2,986,656	+				-0.5
2,986,656	+				+2.6
2,986,661	+				+0.0
2,986,661	+				+0.2
2,986,661	+				+1.0
2,986,669	-				+0.0
2,986,669	-				+1.0
2,986,669	-				-1.8
2,986,688	+				+0.4
2,986,702	+				+0.7
2,986,707	+				+0.6
2,986,726	+				+0.8
2,986,731	+				-1.0
2,986,734	+				-0.2
2,986,770	-				-1.3
2,986,807	+				+0.3
2,986,807	+				+0.1
2,986,812	+				+1.7
2,986,837	+		PGA1_c28500	0.13	+0.3
2,986,856	+		PGA1_c28500	0.19	+2.0
2,986,864	-		PGA1_c28500	0.22	+0.0
2,986,864	-		PGA1_c28500	0.22	-1.3
2,986,897	+		PGA1_c28500	0.32	+1.0
2,986,905	-				-0.6
2,986,905	-		PGA1_c28500	0.35	+1.0
2,986,921	-		PGA1_c28500	0.40	+1.7
2,986,939	+		PGA1_c28500	0.46	+0.9
2,986,948	-		PGA1_c28500	0.49	+1.0
2,986,974	+		PGA1_c28500	0.57	+1.3
2,986,983	+		PGA1_c28500	0.60	+0.0
2,986,983	-		PGA1_c28500	0.60	+1.0
2,987,028	-		PGA1_c28500	0.74	+1.6
2,987,030	+		PGA1_c28500	0.75	+1.0
2,987,071	+		PGA1_c28500	0.88	-2.2
2,987,071	+		PGA1_c28500	0.88	+0.3
2,987,074	-		PGA1_c28500	0.89	+2.0
2,987,074	-		PGA1_c28500	0.89	-1.8
2,987,079	-				+0.3
2,987,079	-				-0.3
2,987,084	+				-1.1
2,987,084	+				+1.3
2,987,084	+				+1.6
2,987,084	+				+1.2
2,987,089	-				+0.3
2,987,092	-				-0.1
2,987,092	-				-2.2
2,987,092	-				-1.3
2,987,092	-				-1.0
2,987,092	-				-1.4
2,987,092	-				-3.5
2,987,092	-				+1.6
2,987,092	-				+0.7
2,987,092	-				+3.0
2,987,092	-				-0.1
2,987,094	-				-0.6
2,987,094	-				-1.3
2,987,101	+				+0.2