Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2723 and HP15_2724 are separated by 74 nucleotides HP15_2724 and HP15_2725 are separated by 9 nucleotides HP15_2725 and HP15_2726 are separated by 47 nucleotides
HP15_2723: HP15_2723 - thioredoxin, at 2,876,408 to 2,876,791
_2723
HP15_2724: HP15_2724 - short-chain dehydrogenase/reductase SDR, at 2,876,866 to 2,877,726
_2724
HP15_2725: HP15_2725 - conserved hypothetical protein, at 2,877,736 to 2,878,119
_2725
HP15_2726: HP15_2726 - abortive infection protein-like protein, at 2,878,167 to 2,878,976
_2726
Position (kb)
2877
2878
2879 Strain fitness (log2 ratio)
-2
-1
0
1 at 2876.865 kb on - strand at 2876.884 kb on + strand at 2877.012 kb on - strand, within HP15_2724 at 2877.095 kb on + strand, within HP15_2724 at 2877.097 kb on - strand, within HP15_2724 at 2877.185 kb on - strand, within HP15_2724 at 2877.209 kb on + strand, within HP15_2724 at 2877.217 kb on - strand, within HP15_2724 at 2877.217 kb on - strand, within HP15_2724 at 2877.232 kb on - strand, within HP15_2724 at 2877.273 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.286 kb on + strand, within HP15_2724 at 2877.294 kb on - strand, within HP15_2724 at 2877.330 kb on - strand, within HP15_2724 at 2877.385 kb on + strand, within HP15_2724 at 2877.420 kb on + strand, within HP15_2724 at 2877.439 kb on + strand, within HP15_2724 at 2877.439 kb on + strand, within HP15_2724 at 2877.447 kb on - strand, within HP15_2724 at 2877.474 kb on + strand, within HP15_2724 at 2877.487 kb on - strand, within HP15_2724 at 2877.509 kb on - strand, within HP15_2724 at 2877.513 kb on - strand, within HP15_2724 at 2877.571 kb on - strand, within HP15_2724 at 2877.662 kb on + strand at 2877.712 kb on - strand at 2877.828 kb on + strand, within HP15_2725 at 2877.836 kb on - strand, within HP15_2725 at 2877.978 kb on + strand, within HP15_2725 at 2878.002 kb on + strand, within HP15_2725 at 2878.079 kb on - strand, within HP15_2725 at 2878.112 kb on - strand at 2878.173 kb on - strand at 2878.260 kb on + strand, within HP15_2726 at 2878.290 kb on + strand, within HP15_2726 at 2878.340 kb on - strand, within HP15_2726 at 2878.354 kb on - strand, within HP15_2726 at 2878.449 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.471 kb on + strand, within HP15_2726 at 2878.483 kb on - strand, within HP15_2726 at 2878.499 kb on + strand, within HP15_2726 at 2878.543 kb on - strand, within HP15_2726 at 2878.558 kb on - strand, within HP15_2726 at 2878.575 kb on - strand, within HP15_2726 at 2878.636 kb on + strand, within HP15_2726 at 2878.691 kb on + strand, within HP15_2726 at 2878.710 kb on - strand, within HP15_2726 at 2878.734 kb on + strand, within HP15_2726 at 2878.774 kb on - strand, within HP15_2726 at 2878.820 kb on - strand, within HP15_2726 at 2878.852 kb on + strand, within HP15_2726 at 2878.973 kb on + strand at 2878.988 kb on + strand at 2878.988 kb on + strand at 2879.024 kb on + strand at 2879.032 kb on - strand at 2879.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,876,865 - -0.9 2,876,884 + +0.2 2,877,012 - HP15_2724 0.17 +0.5 2,877,095 + HP15_2724 0.27 +0.4 2,877,097 - HP15_2724 0.27 +0.3 2,877,185 - HP15_2724 0.37 +1.0 2,877,209 + HP15_2724 0.40 -1.1 2,877,217 - HP15_2724 0.41 -0.2 2,877,217 - HP15_2724 0.41 +0.6 2,877,232 - HP15_2724 0.43 -0.1 2,877,273 + HP15_2724 0.47 +0.2 2,877,286 + HP15_2724 0.49 -0.2 2,877,286 + HP15_2724 0.49 +0.2 2,877,286 + HP15_2724 0.49 -1.2 2,877,294 - HP15_2724 0.50 +0.1 2,877,330 - HP15_2724 0.54 -0.4 2,877,385 + HP15_2724 0.60 -0.5 2,877,420 + HP15_2724 0.64 -1.4 2,877,439 + HP15_2724 0.67 -0.0 2,877,439 + HP15_2724 0.67 -0.5 2,877,447 - HP15_2724 0.67 +0.2 2,877,474 + HP15_2724 0.71 -0.2 2,877,487 - HP15_2724 0.72 +1.6 2,877,509 - HP15_2724 0.75 +1.3 2,877,513 - HP15_2724 0.75 +0.4 2,877,571 - HP15_2724 0.82 +0.4 2,877,662 + -1.0 2,877,712 - +0.1 2,877,828 + HP15_2725 0.24 -2.6 2,877,836 - HP15_2725 0.26 -0.2 2,877,978 + HP15_2725 0.63 -0.1 2,878,002 + HP15_2725 0.69 -1.6 2,878,079 - HP15_2725 0.89 +1.2 2,878,112 - -0.7 2,878,173 - -0.6 2,878,260 + HP15_2726 0.11 +0.4 2,878,290 + HP15_2726 0.15 +1.6 2,878,340 - HP15_2726 0.21 -0.0 2,878,354 - HP15_2726 0.23 +0.8 2,878,449 + HP15_2726 0.35 +0.9 2,878,471 + HP15_2726 0.38 -0.1 2,878,471 + HP15_2726 0.38 +1.3 2,878,471 + HP15_2726 0.38 +0.3 2,878,483 - HP15_2726 0.39 +0.3 2,878,499 + HP15_2726 0.41 -0.9 2,878,543 - HP15_2726 0.46 -0.2 2,878,558 - HP15_2726 0.48 +0.4 2,878,575 - HP15_2726 0.50 -0.2 2,878,636 + HP15_2726 0.58 +0.4 2,878,691 + HP15_2726 0.65 +1.0 2,878,710 - HP15_2726 0.67 -0.5 2,878,734 + HP15_2726 0.70 -0.8 2,878,774 - HP15_2726 0.75 +0.6 2,878,820 - HP15_2726 0.81 -0.3 2,878,852 + HP15_2726 0.85 +0.8 2,878,973 + -0.2 2,878,988 + -0.1 2,878,988 + -0.0 2,879,024 + +1.6 2,879,032 - -1.6 2,879,079 + +0.5
Or see this region's nucleotide sequence