Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2708 and HP15_2709 are separated by 7 nucleotides HP15_2709 and HP15_2710 overlap by 1 nucleotides
HP15_2708: HP15_2708 - transcriptional regulator, PaaX family, at 2,861,523 to 2,862,491
_2708
HP15_2709: HP15_2709 - thioesterase family protein, at 2,862,499 to 2,863,008
_2709
HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931
_2710
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2861.519 kb on + strand at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2862.018 kb on + strand, within HP15_2708 at 2862.046 kb on + strand, within HP15_2708 at 2862.054 kb on + strand, within HP15_2708 at 2862.062 kb on - strand, within HP15_2708 at 2862.125 kb on + strand, within HP15_2708 at 2862.276 kb on + strand, within HP15_2708 at 2862.307 kb on + strand, within HP15_2708 at 2862.453 kb on + strand at 2862.640 kb on - strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2863.058 kb on + strand at 2863.066 kb on - strand at 2863.076 kb on - strand at 2863.259 kb on + strand, within HP15_2710 at 2863.321 kb on + strand, within HP15_2710 at 2863.358 kb on + strand, within HP15_2710 at 2863.376 kb on - strand, within HP15_2710 at 2863.581 kb on - strand, within HP15_2710 at 2863.648 kb on + strand, within HP15_2710 at 2863.707 kb on + strand, within HP15_2710 at 2863.753 kb on + strand, within HP15_2710 at 2863.760 kb on + strand, within HP15_2710 at 2863.790 kb on - strand, within HP15_2710 at 2863.799 kb on + strand, within HP15_2710 at 2863.848 kb on - strand at 2863.947 kb on + strand at 2863.947 kb on + strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,861,519 + +0.0 2,861,785 + HP15_2708 0.27 -2.0 2,861,785 + HP15_2708 0.27 +0.1 2,861,785 + HP15_2708 0.27 -0.8 2,861,785 + HP15_2708 0.27 +1.8 2,861,793 - HP15_2708 0.28 -0.4 2,861,793 - HP15_2708 0.28 +0.0 2,861,793 - HP15_2708 0.28 -0.8 2,861,793 - HP15_2708 0.28 +0.1 2,861,793 - HP15_2708 0.28 +1.5 2,861,793 - HP15_2708 0.28 +2.8 2,862,018 + HP15_2708 0.51 +0.5 2,862,046 + HP15_2708 0.54 +0.6 2,862,054 + HP15_2708 0.55 +0.4 2,862,062 - HP15_2708 0.56 +0.1 2,862,125 + HP15_2708 0.62 +0.4 2,862,276 + HP15_2708 0.78 +0.0 2,862,307 + HP15_2708 0.81 +0.1 2,862,453 + -0.3 2,862,640 - HP15_2709 0.28 -1.4 2,862,714 + HP15_2709 0.42 -0.6 2,862,714 + HP15_2709 0.42 +0.5 2,863,058 + -0.1 2,863,066 - -0.4 2,863,076 - +0.7 2,863,259 + HP15_2710 0.27 +0.8 2,863,321 + HP15_2710 0.34 -0.7 2,863,358 + HP15_2710 0.38 -0.2 2,863,376 - HP15_2710 0.40 -0.0 2,863,581 - HP15_2710 0.62 +0.6 2,863,648 + HP15_2710 0.69 -0.1 2,863,707 + HP15_2710 0.76 -1.0 2,863,753 + HP15_2710 0.81 +0.8 2,863,760 + HP15_2710 0.81 +0.0 2,863,790 - HP15_2710 0.85 -1.0 2,863,799 + HP15_2710 0.86 -0.0 2,863,848 - +0.2 2,863,947 + +0.8 2,863,947 + +0.4 2,863,955 - -0.1 2,863,955 - +0.4 2,863,955 - -0.3 2,863,957 + +0.2
Or see this region's nucleotide sequence