Strain Fitness in Marinobacter adhaerens HP15 around HP15_2703

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2702 and HP15_2703 are separated by 120 nucleotidesHP15_2703 and HP15_2704 are separated by 17 nucleotidesHP15_2704 and HP15_2705 overlap by 4 nucleotides HP15_2702: HP15_2702 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 2,853,812 to 2,855,869 _2702 HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354 _2703 HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130 _2704 HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134 _2705 Position (kb) 2855 2856 2857 2858Strain fitness (log2 ratio) -2 -1 0 1 2at 2855.072 kb on + strand, within HP15_2702at 2855.097 kb on + strand, within HP15_2702at 2855.106 kb on + strand, within HP15_2702at 2855.129 kb on - strand, within HP15_2702at 2855.572 kb on + strand, within HP15_2702at 2855.736 kb on - strandat 2855.782 kb on + strandat 2855.785 kb on - strandat 2855.916 kb on - strandat 2855.941 kb on + strandat 2855.949 kb on - strandat 2856.093 kb on + strandat 2856.146 kb on - strand, within HP15_2703at 2856.293 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.469 kb on + strand, within HP15_2703at 2856.558 kb on + strand, within HP15_2703at 2856.558 kb on + strand, within HP15_2703at 2856.626 kb on - strand, within HP15_2703at 2856.626 kb on - strand, within HP15_2703at 2856.666 kb on + strand, within HP15_2703at 2856.719 kb on + strand, within HP15_2703at 2856.920 kb on - strand, within HP15_2703at 2856.961 kb on + strand, within HP15_2703at 2856.966 kb on + strand, within HP15_2703at 2856.969 kb on - strand, within HP15_2703at 2857.046 kb on + strand, within HP15_2703at 2857.131 kb on - strand, within HP15_2703at 2857.230 kb on - strandat 2857.326 kb on + strandat 2857.568 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.672 kb on - strand, within HP15_2704at 2857.788 kb on - strand, within HP15_2704at 2857.795 kb on - strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.977 kb on - strand, within HP15_2704at 2857.986 kb on + strand, within HP15_2704at 2858.030 kb on + strand, within HP15_2704at 2858.111 kb on + strandat 2858.221 kb on + strandat 2858.337 kb on - strand, within HP15_2705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,855,072 + HP15_2702 0.61 +0.2
2,855,097 + HP15_2702 0.62 -0.9
2,855,106 + HP15_2702 0.63 +0.5
2,855,129 - HP15_2702 0.64 +0.2
2,855,572 + HP15_2702 0.86 -0.4
2,855,736 - -2.2
2,855,782 + +0.1
2,855,785 - -0.1
2,855,916 - -0.4
2,855,941 + -0.7
2,855,949 - +0.3
2,856,093 + -0.6
2,856,146 - HP15_2703 0.11 +0.5
2,856,293 - HP15_2703 0.22 +0.3
2,856,393 - HP15_2703 0.30 +0.4
2,856,393 - HP15_2703 0.30 +0.7
2,856,393 - HP15_2703 0.30 +0.3
2,856,393 - HP15_2703 0.30 +1.6
2,856,469 + HP15_2703 0.35 +0.1
2,856,558 + HP15_2703 0.42 -0.2
2,856,558 + HP15_2703 0.42 +0.6
2,856,626 - HP15_2703 0.47 +0.3
2,856,626 - HP15_2703 0.47 -0.0
2,856,666 + HP15_2703 0.50 -0.2
2,856,719 + HP15_2703 0.53 +1.4
2,856,920 - HP15_2703 0.68 -0.7
2,856,961 + HP15_2703 0.71 +0.2
2,856,966 + HP15_2703 0.72 +0.7
2,856,969 - HP15_2703 0.72 +1.4
2,857,046 + HP15_2703 0.77 -0.1
2,857,131 - HP15_2703 0.84 +1.2
2,857,230 - -0.4
2,857,326 + +0.1
2,857,568 + HP15_2704 0.26 +0.7
2,857,664 + HP15_2704 0.38 -0.8
2,857,664 + HP15_2704 0.38 +2.3
2,857,672 - HP15_2704 0.40 -1.0
2,857,788 - HP15_2704 0.55 +0.1
2,857,795 - HP15_2704 0.56 +0.9
2,857,967 + HP15_2704 0.78 -0.3
2,857,967 + HP15_2704 0.78 -0.6
2,857,977 - HP15_2704 0.80 -0.6
2,857,986 + HP15_2704 0.81 -0.8
2,858,030 + HP15_2704 0.87 +1.1
2,858,111 + +0.5
2,858,221 + +0.6
2,858,337 - HP15_2705 0.21 +0.4

Or see this region's nucleotide sequence