Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2702 and HP15_2703 are separated by 120 nucleotides HP15_2703 and HP15_2704 are separated by 17 nucleotides HP15_2704 and HP15_2705 overlap by 4 nucleotides
HP15_2702: HP15_2702 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 2,853,812 to 2,855,869
_2702
HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354
_2703
HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130
_2704
HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134
_2705
Position (kb)
2855
2856
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2855.072 kb on + strand, within HP15_2702 at 2855.097 kb on + strand, within HP15_2702 at 2855.106 kb on + strand, within HP15_2702 at 2855.129 kb on - strand, within HP15_2702 at 2855.572 kb on + strand, within HP15_2702 at 2855.736 kb on - strand at 2855.782 kb on + strand at 2855.785 kb on - strand at 2855.916 kb on - strand at 2855.941 kb on + strand at 2855.949 kb on - strand at 2856.093 kb on + strand at 2856.146 kb on - strand, within HP15_2703 at 2856.293 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.469 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.666 kb on + strand, within HP15_2703 at 2856.719 kb on + strand, within HP15_2703 at 2856.920 kb on - strand, within HP15_2703 at 2856.961 kb on + strand, within HP15_2703 at 2856.966 kb on + strand, within HP15_2703 at 2856.969 kb on - strand, within HP15_2703 at 2857.046 kb on + strand, within HP15_2703 at 2857.131 kb on - strand, within HP15_2703 at 2857.230 kb on - strand at 2857.326 kb on + strand at 2857.568 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.672 kb on - strand, within HP15_2704 at 2857.788 kb on - strand, within HP15_2704 at 2857.795 kb on - strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.977 kb on - strand, within HP15_2704 at 2857.986 kb on + strand, within HP15_2704 at 2858.030 kb on + strand, within HP15_2704 at 2858.111 kb on + strand at 2858.221 kb on + strand at 2858.337 kb on - strand, within HP15_2705
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,855,072 + HP15_2702 0.61 +0.2 2,855,097 + HP15_2702 0.62 -0.9 2,855,106 + HP15_2702 0.63 +0.5 2,855,129 - HP15_2702 0.64 +0.2 2,855,572 + HP15_2702 0.86 -0.4 2,855,736 - -2.2 2,855,782 + +0.1 2,855,785 - -0.1 2,855,916 - -0.4 2,855,941 + -0.7 2,855,949 - +0.3 2,856,093 + -0.6 2,856,146 - HP15_2703 0.11 +0.5 2,856,293 - HP15_2703 0.22 +0.3 2,856,393 - HP15_2703 0.30 +0.4 2,856,393 - HP15_2703 0.30 +0.7 2,856,393 - HP15_2703 0.30 +0.3 2,856,393 - HP15_2703 0.30 +1.6 2,856,469 + HP15_2703 0.35 +0.1 2,856,558 + HP15_2703 0.42 -0.2 2,856,558 + HP15_2703 0.42 +0.6 2,856,626 - HP15_2703 0.47 +0.3 2,856,626 - HP15_2703 0.47 -0.0 2,856,666 + HP15_2703 0.50 -0.2 2,856,719 + HP15_2703 0.53 +1.4 2,856,920 - HP15_2703 0.68 -0.7 2,856,961 + HP15_2703 0.71 +0.2 2,856,966 + HP15_2703 0.72 +0.7 2,856,969 - HP15_2703 0.72 +1.4 2,857,046 + HP15_2703 0.77 -0.1 2,857,131 - HP15_2703 0.84 +1.2 2,857,230 - -0.4 2,857,326 + +0.1 2,857,568 + HP15_2704 0.26 +0.7 2,857,664 + HP15_2704 0.38 -0.8 2,857,664 + HP15_2704 0.38 +2.3 2,857,672 - HP15_2704 0.40 -1.0 2,857,788 - HP15_2704 0.55 +0.1 2,857,795 - HP15_2704 0.56 +0.9 2,857,967 + HP15_2704 0.78 -0.3 2,857,967 + HP15_2704 0.78 -0.6 2,857,977 - HP15_2704 0.80 -0.6 2,857,986 + HP15_2704 0.81 -0.8 2,858,030 + HP15_2704 0.87 +1.1 2,858,111 + +0.5 2,858,221 + +0.6 2,858,337 - HP15_2705 0.21 +0.4
Or see this region's nucleotide sequence