Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2661 and HP15_2662 are separated by 238 nucleotides HP15_2662 and HP15_2663 overlap by 4 nucleotides HP15_2663 and HP15_2664 are separated by 18 nucleotides
HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data) , at 2,810,713 to 2,811,699
_2661
HP15_2662: HP15_2662 - two-component sensor histidine kinase, at 2,811,938 to 2,813,557
_2662
HP15_2663: HP15_2663 - response regulator receiver and unknown domain protein, at 2,813,554 to 2,814,249
_2663
HP15_2664: HP15_2664 - peptidase M48, Ste24p, at 2,814,268 to 2,815,059
_2664
Position (kb)
2811
2812
2813
2814 Strain fitness (log2 ratio)
-1
0
1 at 2811.042 kb on + strand, within HP15_2661 at 2811.253 kb on + strand, within HP15_2661 at 2811.431 kb on + strand, within HP15_2661 at 2811.525 kb on + strand, within HP15_2661 at 2811.692 kb on + strand at 2811.898 kb on - strand at 2811.991 kb on - strand at 2812.231 kb on - strand, within HP15_2662 at 2812.294 kb on + strand, within HP15_2662 at 2812.416 kb on + strand, within HP15_2662 at 2812.424 kb on - strand, within HP15_2662 at 2812.430 kb on - strand, within HP15_2662 at 2812.438 kb on + strand, within HP15_2662 at 2812.471 kb on - strand, within HP15_2662 at 2812.476 kb on + strand, within HP15_2662 at 2812.505 kb on - strand, within HP15_2662 at 2812.817 kb on + strand, within HP15_2662 at 2813.244 kb on + strand, within HP15_2662 at 2813.294 kb on - strand, within HP15_2662 at 2813.400 kb on + strand at 2813.401 kb on - strand at 2813.424 kb on + strand at 2813.432 kb on - strand at 2813.458 kb on + strand at 2813.458 kb on + strand at 2813.458 kb on + strand at 2813.466 kb on - strand at 2813.480 kb on + strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.772 kb on - strand, within HP15_2663 at 2813.818 kb on + strand, within HP15_2663 at 2813.818 kb on + strand, within HP15_2663 at 2813.832 kb on - strand, within HP15_2663 at 2813.912 kb on + strand, within HP15_2663 at 2813.912 kb on + strand, within HP15_2663 at 2813.920 kb on - strand, within HP15_2663 at 2813.979 kb on + strand, within HP15_2663 at 2814.264 kb on - strand at 2814.367 kb on + strand, within HP15_2664 at 2814.382 kb on + strand, within HP15_2664 at 2814.392 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.454 kb on - strand, within HP15_2664 at 2814.456 kb on + strand, within HP15_2664 at 2814.464 kb on - strand, within HP15_2664 at 2814.468 kb on + strand, within HP15_2664 at 2814.469 kb on + strand, within HP15_2664 at 2814.477 kb on - strand, within HP15_2664 at 2814.484 kb on + strand, within HP15_2664 at 2814.553 kb on + strand, within HP15_2664
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,811,042 + HP15_2661 0.33 -0.4 2,811,253 + HP15_2661 0.55 +1.0 2,811,431 + HP15_2661 0.73 -0.2 2,811,525 + HP15_2661 0.82 +1.6 2,811,692 + +0.2 2,811,898 - +0.6 2,811,991 - +0.0 2,812,231 - HP15_2662 0.18 -0.5 2,812,294 + HP15_2662 0.22 -0.1 2,812,416 + HP15_2662 0.30 -1.0 2,812,424 - HP15_2662 0.30 -0.4 2,812,430 - HP15_2662 0.30 -0.3 2,812,438 + HP15_2662 0.31 +0.5 2,812,471 - HP15_2662 0.33 +0.2 2,812,476 + HP15_2662 0.33 -0.4 2,812,505 - HP15_2662 0.35 -0.5 2,812,817 + HP15_2662 0.54 -1.2 2,813,244 + HP15_2662 0.81 -0.3 2,813,294 - HP15_2662 0.84 -0.5 2,813,400 + +0.1 2,813,401 - -0.5 2,813,424 + +0.0 2,813,432 - +0.2 2,813,458 + +1.7 2,813,458 + -0.4 2,813,458 + -0.5 2,813,466 - +0.0 2,813,480 + -0.3 2,813,521 - -1.4 2,813,521 - +1.0 2,813,521 - +0.3 2,813,521 - +1.0 2,813,521 - -0.1 2,813,521 - +1.6 2,813,772 - HP15_2663 0.31 -0.7 2,813,818 + HP15_2663 0.38 +0.9 2,813,818 + HP15_2663 0.38 +1.6 2,813,832 - HP15_2663 0.40 -0.4 2,813,912 + HP15_2663 0.51 -0.7 2,813,912 + HP15_2663 0.51 +0.2 2,813,920 - HP15_2663 0.53 -0.4 2,813,979 + HP15_2663 0.61 -0.7 2,814,264 - +1.0 2,814,367 + HP15_2664 0.12 +0.6 2,814,382 + HP15_2664 0.14 +1.6 2,814,392 + HP15_2664 0.16 -0.3 2,814,446 + HP15_2664 0.22 +0.5 2,814,446 + HP15_2664 0.22 +0.3 2,814,446 + HP15_2664 0.22 -0.1 2,814,446 + HP15_2664 0.22 +0.0 2,814,454 - HP15_2664 0.23 +0.0 2,814,456 + HP15_2664 0.24 -0.9 2,814,464 - HP15_2664 0.25 +1.5 2,814,468 + HP15_2664 0.25 -0.0 2,814,469 + HP15_2664 0.25 +1.2 2,814,477 - HP15_2664 0.26 +1.0 2,814,484 + HP15_2664 0.27 -0.3 2,814,553 + HP15_2664 0.36 -0.4
Or see this region's nucleotide sequence