Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2568 and HP15_2569 are separated by 13 nucleotides HP15_2569 and HP15_2570 are separated by 146 nucleotides
HP15_2568: HP15_2568 - permease of the major facilitator superfamily protein, at 2,715,156 to 2,716,469
_2568
HP15_2569: HP15_2569 - conserved hypothetical protein, membrane, at 2,716,483 to 2,716,770
_2569
HP15_2570: HP15_2570 - methyl-accepting chemotaxis sensory transducer, at 2,716,917 to 2,718,521
_2570
Position (kb)
2716
2717 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2715.531 kb on + strand, within HP15_2568 at 2715.656 kb on - strand, within HP15_2568 at 2715.746 kb on + strand, within HP15_2568 at 2715.758 kb on + strand, within HP15_2568 at 2715.758 kb on + strand, within HP15_2568 at 2715.825 kb on + strand, within HP15_2568 at 2715.833 kb on - strand, within HP15_2568 at 2715.896 kb on + strand, within HP15_2568 at 2715.952 kb on + strand, within HP15_2568 at 2715.957 kb on + strand, within HP15_2568 at 2715.957 kb on + strand, within HP15_2568 at 2716.017 kb on - strand, within HP15_2568 at 2716.041 kb on + strand, within HP15_2568 at 2716.049 kb on - strand, within HP15_2568 at 2716.090 kb on + strand, within HP15_2568 at 2716.127 kb on + strand, within HP15_2568 at 2716.156 kb on - strand, within HP15_2568 at 2716.179 kb on + strand, within HP15_2568 at 2716.246 kb on + strand, within HP15_2568 at 2716.438 kb on - strand at 2716.463 kb on + strand at 2716.623 kb on - strand, within HP15_2569 at 2716.623 kb on - strand, within HP15_2569 at 2716.633 kb on - strand, within HP15_2569 at 2716.723 kb on + strand, within HP15_2569 at 2716.749 kb on - strand at 2716.768 kb on - strand at 2716.879 kb on + strand at 2717.103 kb on - strand, within HP15_2570 at 2717.395 kb on - strand, within HP15_2570 at 2717.398 kb on + strand, within HP15_2570 at 2717.486 kb on + strand, within HP15_2570 at 2717.600 kb on - strand, within HP15_2570 at 2717.600 kb on - strand, within HP15_2570 at 2717.628 kb on - strand, within HP15_2570 at 2717.635 kb on + strand, within HP15_2570 at 2717.635 kb on - strand, within HP15_2570 at 2717.657 kb on + strand, within HP15_2570 at 2717.681 kb on + strand, within HP15_2570 at 2717.689 kb on - strand, within HP15_2570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,715,531 + HP15_2568 0.29 +0.4 2,715,656 - HP15_2568 0.38 +2.2 2,715,746 + HP15_2568 0.45 +1.6 2,715,758 + HP15_2568 0.46 -0.4 2,715,758 + HP15_2568 0.46 +0.8 2,715,825 + HP15_2568 0.51 -0.7 2,715,833 - HP15_2568 0.52 -0.5 2,715,896 + HP15_2568 0.56 +1.0 2,715,952 + HP15_2568 0.61 -0.0 2,715,957 + HP15_2568 0.61 +1.6 2,715,957 + HP15_2568 0.61 -0.1 2,716,017 - HP15_2568 0.66 +0.7 2,716,041 + HP15_2568 0.67 -0.9 2,716,049 - HP15_2568 0.68 -0.6 2,716,090 + HP15_2568 0.71 +0.9 2,716,127 + HP15_2568 0.74 -0.2 2,716,156 - HP15_2568 0.76 -0.0 2,716,179 + HP15_2568 0.78 -1.0 2,716,246 + HP15_2568 0.83 +1.2 2,716,438 - -0.2 2,716,463 + +0.0 2,716,623 - HP15_2569 0.49 -1.0 2,716,623 - HP15_2569 0.49 -2.4 2,716,633 - HP15_2569 0.52 -1.0 2,716,723 + HP15_2569 0.83 -3.1 2,716,749 - -2.2 2,716,768 - -1.4 2,716,879 + +2.4 2,717,103 - HP15_2570 0.12 +0.4 2,717,395 - HP15_2570 0.30 -1.2 2,717,398 + HP15_2570 0.30 -0.6 2,717,486 + HP15_2570 0.35 +0.5 2,717,600 - HP15_2570 0.43 +0.5 2,717,600 - HP15_2570 0.43 +0.1 2,717,628 - HP15_2570 0.44 -1.6 2,717,635 + HP15_2570 0.45 +0.5 2,717,635 - HP15_2570 0.45 -0.9 2,717,657 + HP15_2570 0.46 -0.4 2,717,681 + HP15_2570 0.48 +0.6 2,717,689 - HP15_2570 0.48 +2.5
Or see this region's nucleotide sequence