Strain Fitness in Marinobacter adhaerens HP15 around HP15_2563

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2562 and HP15_2563 are separated by 65 nucleotidesHP15_2563 and HP15_2564 are separated by 193 nucleotides HP15_2562: HP15_2562 - conserved hypothetical protein, at 2,707,891 to 2,709,126 _2562 HP15_2563: HP15_2563 - protein containing DUF519, at 2,709,192 to 2,710,031 _2563 HP15_2564: HP15_2564 - lipoprotein, at 2,710,225 to 2,711,511 _2564 Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -1 0 1at 2708.213 kb on - strand, within HP15_2562at 2708.770 kb on - strand, within HP15_2562at 2709.025 kb on - strandat 2709.040 kb on + strandat 2709.265 kb on + strandat 2709.371 kb on - strand, within HP15_2563at 2709.434 kb on - strand, within HP15_2563at 2709.434 kb on - strand, within HP15_2563at 2709.522 kb on - strand, within HP15_2563at 2709.532 kb on + strand, within HP15_2563at 2709.532 kb on + strand, within HP15_2563at 2709.615 kb on + strand, within HP15_2563at 2709.751 kb on - strand, within HP15_2563at 2709.854 kb on + strand, within HP15_2563at 2709.896 kb on - strand, within HP15_2563at 2709.896 kb on - strand, within HP15_2563at 2710.099 kb on + strandat 2710.099 kb on + strandat 2710.107 kb on - strandat 2710.107 kb on - strandat 2710.232 kb on + strandat 2710.232 kb on + strandat 2710.266 kb on + strandat 2710.269 kb on - strandat 2710.359 kb on - strand, within HP15_2564at 2710.459 kb on + strand, within HP15_2564at 2710.658 kb on + strand, within HP15_2564at 2710.713 kb on - strand, within HP15_2564at 2710.725 kb on - strand, within HP15_2564at 2710.882 kb on - strand, within HP15_2564

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,708,213 - HP15_2562 0.26 +0.8
2,708,770 - HP15_2562 0.71 -0.0
2,709,025 - -1.4
2,709,040 + -0.6
2,709,265 + +0.2
2,709,371 - HP15_2563 0.21 -1.4
2,709,434 - HP15_2563 0.29 -0.2
2,709,434 - HP15_2563 0.29 -0.5
2,709,522 - HP15_2563 0.39 -0.0
2,709,532 + HP15_2563 0.40 -0.2
2,709,532 + HP15_2563 0.40 -1.6
2,709,615 + HP15_2563 0.50 -1.0
2,709,751 - HP15_2563 0.67 +0.9
2,709,854 + HP15_2563 0.79 -0.1
2,709,896 - HP15_2563 0.84 +0.8
2,709,896 - HP15_2563 0.84 -0.2
2,710,099 + +0.1
2,710,099 + -0.7
2,710,107 - -1.2
2,710,107 - -0.2
2,710,232 + +1.2
2,710,232 + -0.0
2,710,266 + +0.8
2,710,269 - -0.0
2,710,359 - HP15_2564 0.10 -1.0
2,710,459 + HP15_2564 0.18 -0.5
2,710,658 + HP15_2564 0.34 +0.1
2,710,713 - HP15_2564 0.38 +0.4
2,710,725 - HP15_2564 0.39 +0.6
2,710,882 - HP15_2564 0.51 -0.1

Or see this region's nucleotide sequence