Strain Fitness in Marinobacter adhaerens HP15 around HP15_2493

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2491 and HP15_2492 overlap by 8 nucleotidesHP15_2492 and HP15_2493 overlap by 4 nucleotidesHP15_2493 and HP15_2494 are separated by 54 nucleotides HP15_2491: HP15_2491 - kinase, at 2,630,828 to 2,631,196 _2491 HP15_2492: HP15_2492 - methyltransferase, at 2,631,189 to 2,631,965 _2492 HP15_2493: HP15_2493 - methyltransferase, at 2,631,962 to 2,632,960 _2493 HP15_2494: HP15_2494 - adenlyosuccinate synthase, at 2,633,015 to 2,634,310 _2494 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2631.026 kb on + strand, within HP15_2491at 2631.079 kb on - strand, within HP15_2491at 2631.225 kb on - strandat 2631.242 kb on + strandat 2631.348 kb on - strand, within HP15_2492at 2631.397 kb on + strand, within HP15_2492at 2631.402 kb on + strand, within HP15_2492at 2631.402 kb on + strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.595 kb on - strand, within HP15_2492at 2631.654 kb on - strand, within HP15_2492at 2631.691 kb on - strand, within HP15_2492at 2631.691 kb on - strand, within HP15_2492at 2631.701 kb on - strand, within HP15_2492at 2631.845 kb on + strand, within HP15_2492at 2632.039 kb on - strandat 2632.054 kb on - strandat 2632.137 kb on + strand, within HP15_2493at 2632.185 kb on + strand, within HP15_2493at 2632.195 kb on + strand, within HP15_2493at 2632.203 kb on - strand, within HP15_2493at 2632.270 kb on - strand, within HP15_2493at 2632.316 kb on + strand, within HP15_2493at 2632.932 kb on + strandat 2632.932 kb on + strandat 2632.962 kb on - strandat 2633.010 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
2,631,026 + HP15_2491 0.54 +0.2
2,631,079 - HP15_2491 0.68 -1.0
2,631,225 - +0.3
2,631,242 + +0.4
2,631,348 - HP15_2492 0.20 +0.1
2,631,397 + HP15_2492 0.27 -0.3
2,631,402 + HP15_2492 0.27 -0.2
2,631,402 + HP15_2492 0.27 +0.1
2,631,410 - HP15_2492 0.28 +0.4
2,631,410 - HP15_2492 0.28 +1.0
2,631,410 - HP15_2492 0.28 -0.4
2,631,410 - HP15_2492 0.28 +0.1
2,631,595 - HP15_2492 0.52 -0.1
2,631,654 - HP15_2492 0.60 +0.0
2,631,691 - HP15_2492 0.65 -0.7
2,631,691 - HP15_2492 0.65 -0.9
2,631,701 - HP15_2492 0.66 -0.2
2,631,845 + HP15_2492 0.84 -0.9
2,632,039 - -3.2
2,632,054 - -1.4
2,632,137 + HP15_2493 0.18 -1.4
2,632,185 + HP15_2493 0.22 -1.2
2,632,195 + HP15_2493 0.23 -1.9
2,632,203 - HP15_2493 0.24 -0.3
2,632,270 - HP15_2493 0.31 +0.5
2,632,316 + HP15_2493 0.35 +0.5
2,632,932 + -0.2
2,632,932 + +0.4
2,632,962 - +0.5
2,633,010 + +2.0

Or see this region's nucleotide sequence