Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2459 and HP15_2460 are separated by 44 nucleotides HP15_2460 and HP15_2461 are separated by 151 nucleotides HP15_2461 and HP15_2462 are separated by 160 nucleotides
HP15_2459: HP15_2459 - MiaB-like tRNA modifying enzyme YliG, at 2,598,609 to 2,599,955
_2459
HP15_2460: HP15_2460 - hypothetical protein, at 2,600,000 to 2,600,119
_2460
HP15_2461: HP15_2461 - type IV pilus assembly PilZ, at 2,600,271 to 2,600,681
_2461
HP15_2462: HP15_2462 - sulfate adenylyltransferase, small subunit, at 2,600,842 to 2,601,750
_2462
Position (kb)
2600
2601 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2599.371 kb on - strand, within HP15_2459 at 2599.395 kb on + strand, within HP15_2459 at 2599.449 kb on + strand, within HP15_2459 at 2599.481 kb on + strand, within HP15_2459 at 2599.510 kb on + strand, within HP15_2459 at 2599.510 kb on + strand, within HP15_2459 at 2599.510 kb on + strand, within HP15_2459 at 2599.815 kb on + strand, within HP15_2459 at 2599.820 kb on + strand, within HP15_2459 at 2599.840 kb on + strand at 2599.848 kb on - strand at 2599.848 kb on - strand at 2599.848 kb on - strand at 2599.885 kb on + strand at 2599.936 kb on - strand at 2599.949 kb on - strand at 2600.032 kb on - strand, within HP15_2460 at 2600.263 kb on - strand at 2600.376 kb on + strand, within HP15_2461 at 2600.453 kb on + strand, within HP15_2461 at 2600.550 kb on + strand, within HP15_2461 at 2600.578 kb on + strand, within HP15_2461 at 2600.675 kb on + strand at 2600.718 kb on - strand at 2600.775 kb on - strand at 2600.798 kb on + strand at 2600.816 kb on - strand at 2600.966 kb on - strand, within HP15_2462 at 2600.977 kb on - strand, within HP15_2462 at 2600.977 kb on - strand, within HP15_2462 at 2600.980 kb on + strand, within HP15_2462 at 2601.087 kb on - strand, within HP15_2462 at 2601.092 kb on + strand, within HP15_2462 at 2601.124 kb on + strand, within HP15_2462 at 2601.159 kb on - strand, within HP15_2462 at 2601.234 kb on + strand, within HP15_2462 at 2601.301 kb on + strand, within HP15_2462 at 2601.372 kb on + strand at 2601.380 kb on - strand, within HP15_2462 at 2601.390 kb on - strand, within HP15_2462 at 2601.415 kb on - strand, within HP15_2462 at 2601.598 kb on + strand, within HP15_2462 at 2601.603 kb on + strand, within HP15_2462
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,599,371 - HP15_2459 0.57 -2.1 2,599,395 + HP15_2459 0.58 +0.1 2,599,449 + HP15_2459 0.62 -1.4 2,599,481 + HP15_2459 0.65 +0.1 2,599,510 + HP15_2459 0.67 +2.5 2,599,510 + HP15_2459 0.67 -0.0 2,599,510 + HP15_2459 0.67 -0.3 2,599,815 + HP15_2459 0.90 +0.1 2,599,820 + HP15_2459 0.90 +0.8 2,599,840 + -0.3 2,599,848 - -1.5 2,599,848 - +0.2 2,599,848 - -1.2 2,599,885 + +0.5 2,599,936 - +0.4 2,599,949 - -1.0 2,600,032 - HP15_2460 0.27 +0.7 2,600,263 - +1.8 2,600,376 + HP15_2461 0.26 -0.5 2,600,453 + HP15_2461 0.44 -0.8 2,600,550 + HP15_2461 0.68 +0.5 2,600,578 + HP15_2461 0.75 +0.1 2,600,675 + -0.6 2,600,718 - +0.8 2,600,775 - +0.4 2,600,798 + -0.2 2,600,816 - +0.4 2,600,966 - HP15_2462 0.14 +0.1 2,600,977 - HP15_2462 0.15 -0.1 2,600,977 - HP15_2462 0.15 +1.0 2,600,980 + HP15_2462 0.15 -0.5 2,601,087 - HP15_2462 0.27 +0.7 2,601,092 + HP15_2462 0.28 -0.0 2,601,124 + HP15_2462 0.31 -2.0 2,601,159 - HP15_2462 0.35 +0.8 2,601,234 + HP15_2462 0.43 +0.3 2,601,301 + HP15_2462 0.50 -0.0 2,601,372 + -0.0 2,601,380 - HP15_2462 0.59 -0.1 2,601,390 - HP15_2462 0.60 +0.4 2,601,415 - HP15_2462 0.63 +0.2 2,601,598 + HP15_2462 0.83 +0.2 2,601,603 + HP15_2462 0.84 +2.8
Or see this region's nucleotide sequence