Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_247 and HP15_248 are separated by 14 nucleotides HP15_248 and HP15_249 are separated by 16 nucleotides HP15_249 and HP15_250 are separated by 28 nucleotides
HP15_247: HP15_247 - diaminopimelate decarboxylase, at 235,559 to 236,809
_247
HP15_248: HP15_248 - diaminopimelate epimerase, at 236,824 to 237,738
_248
HP15_249: HP15_249 - protein containing DUF484, at 237,755 to 238,501
_249
HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462
_250
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 237.667 kb on + strand at 237.677 kb on - strand at 237.748 kb on - strand at 237.751 kb on + strand at 237.875 kb on - strand, within HP15_249 at 237.935 kb on - strand, within HP15_249 at 237.942 kb on + strand, within HP15_249 at 238.020 kb on - strand, within HP15_249 at 238.153 kb on + strand, within HP15_249 at 238.177 kb on - strand, within HP15_249 at 238.222 kb on + strand, within HP15_249 at 238.381 kb on + strand, within HP15_249 at 238.520 kb on - strand at 238.530 kb on - strand at 238.929 kb on - strand, within HP15_250 at 239.026 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.102 kb on + strand, within HP15_250 at 239.112 kb on - strand, within HP15_250 at 239.193 kb on + strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.354 kb on + strand, within HP15_250 at 239.362 kb on - strand, within HP15_250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 237,667 + +3.4 237,677 - +0.4 237,748 - -0.5 237,751 + +0.9 237,875 - HP15_249 0.16 -0.7 237,935 - HP15_249 0.24 -1.5 237,942 + HP15_249 0.25 +0.0 238,020 - HP15_249 0.35 +0.4 238,153 + HP15_249 0.53 -1.9 238,177 - HP15_249 0.56 -0.7 238,222 + HP15_249 0.63 +0.7 238,381 + HP15_249 0.84 -0.8 238,520 - -1.2 238,530 - +0.1 238,929 - HP15_250 0.43 -0.4 239,026 - HP15_250 0.53 -1.2 239,031 - HP15_250 0.54 -1.2 239,031 - HP15_250 0.54 -1.3 239,102 + HP15_250 0.61 -1.7 239,112 - HP15_250 0.62 +1.1 239,193 + HP15_250 0.71 -0.9 239,330 - HP15_250 0.86 +0.1 239,330 - HP15_250 0.86 -2.2 239,354 + HP15_250 0.88 -1.5 239,362 - HP15_250 0.89 +2.1
Or see this region's nucleotide sequence