Strain Fitness in Marinobacter adhaerens HP15 around HP15_2443

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2442 and HP15_2443 are separated by 100 nucleotidesHP15_2443 and HP15_2444 are separated by 87 nucleotidesHP15_2444 and HP15_2445 are separated by 22 nucleotides HP15_2442: HP15_2442 - RNA polymerase, sigma 54 subunit, RpoN, at 2,579,904 to 2,581,430 _2442 HP15_2443: HP15_2443 - sigma 54 modulation protein/ribosomal protein S30EA, at 2,581,531 to 2,581,839 _2443 HP15_2444: HP15_2444 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,581,927 to 2,582,397 _2444 HP15_2445: HP15_2445 - protein yhbJ, at 2,582,420 to 2,583,310 _2445 Position (kb) 2581 2582Strain fitness (log2 ratio) -2 -1 0 1 2at 2580.635 kb on - strand, within HP15_2442at 2580.665 kb on + strand, within HP15_2442at 2580.920 kb on - strand, within HP15_2442at 2581.016 kb on + strand, within HP15_2442at 2581.016 kb on + strand, within HP15_2442at 2581.386 kb on + strandat 2581.452 kb on - strandat 2581.556 kb on + strandat 2581.710 kb on + strand, within HP15_2443at 2582.528 kb on + strand, within HP15_2445at 2582.574 kb on - strand, within HP15_2445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,580,635 - HP15_2442 0.48 +1.2
2,580,665 + HP15_2442 0.50 -0.1
2,580,920 - HP15_2442 0.67 -0.8
2,581,016 + HP15_2442 0.73 +0.7
2,581,016 + HP15_2442 0.73 -0.1
2,581,386 + -2.5
2,581,452 - +0.8
2,581,556 + +0.9
2,581,710 + HP15_2443 0.58 -0.5
2,582,528 + HP15_2445 0.12 +1.8
2,582,574 - HP15_2445 0.17 +0.5

Or see this region's nucleotide sequence