Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_23 and HP15_24 are separated by 774 nucleotides HP15_24 and HP15_25 are separated by 165 nucleotides
HP15_23: HP15_23 - conserved hypothetical protein, at 25,999 to 27,033
_23
HP15_24: HP15_24 - membrane protein, at 27,808 to 28,092
_24
HP15_25: HP15_25 - methyltransferase, FkbM family protein-like protein, at 28,258 to 29,088
_25
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.891 kb on + strand, within HP15_23 at 26.906 kb on + strand, within HP15_23 at 26.914 kb on - strand, within HP15_23 at 26.914 kb on - strand, within HP15_23 at 26.914 kb on - strand, within HP15_23 at 26.944 kb on + strand at 26.957 kb on - strand at 26.957 kb on - strand at 27.058 kb on + strand at 27.081 kb on - strand at 27.436 kb on + strand at 27.446 kb on + strand at 27.464 kb on - strand at 27.502 kb on + strand at 27.534 kb on + strand at 27.542 kb on - strand at 27.719 kb on - strand at 27.799 kb on + strand at 27.800 kb on + strand at 27.870 kb on + strand, within HP15_24 at 27.870 kb on + strand, within HP15_24 at 28.004 kb on - strand, within HP15_24 at 28.024 kb on - strand, within HP15_24 at 28.080 kb on + strand at 28.173 kb on - strand at 28.199 kb on + strand at 28.206 kb on + strand at 28.214 kb on - strand at 28.247 kb on - strand at 28.271 kb on + strand at 28.342 kb on - strand, within HP15_25 at 28.362 kb on + strand, within HP15_25 at 28.433 kb on - strand, within HP15_25 at 28.433 kb on - strand, within HP15_25 at 28.451 kb on + strand, within HP15_25 at 28.480 kb on - strand, within HP15_25 at 28.493 kb on - strand, within HP15_25 at 28.582 kb on + strand, within HP15_25 at 28.598 kb on + strand, within HP15_25 at 28.611 kb on - strand, within HP15_25 at 28.624 kb on + strand, within HP15_25 at 28.624 kb on + strand, within HP15_25 at 28.639 kb on - strand, within HP15_25 at 28.639 kb on - strand, within HP15_25 at 28.639 kb on - strand, within HP15_25 at 28.639 kb on - strand, within HP15_25 at 28.646 kb on - strand, within HP15_25 at 28.651 kb on - strand, within HP15_25 at 28.656 kb on - strand, within HP15_25 at 28.679 kb on + strand, within HP15_25 at 28.679 kb on + strand, within HP15_25 at 28.695 kb on + strand, within HP15_25 at 28.716 kb on - strand, within HP15_25 at 28.759 kb on - strand, within HP15_25 at 28.774 kb on + strand, within HP15_25 at 28.801 kb on + strand, within HP15_25 at 28.829 kb on + strand, within HP15_25 at 28.837 kb on - strand, within HP15_25 at 28.866 kb on + strand, within HP15_25 at 28.866 kb on + strand, within HP15_25 at 28.876 kb on + strand, within HP15_25 at 28.879 kb on - strand, within HP15_25 at 28.881 kb on + strand, within HP15_25 at 28.889 kb on - strand, within HP15_25 at 28.942 kb on - strand, within HP15_25 at 29.084 kb on + strand at 29.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 26,891 + HP15_23 0.86 -0.4 26,906 + HP15_23 0.88 +1.2 26,914 - HP15_23 0.88 +0.2 26,914 - HP15_23 0.88 +0.2 26,914 - HP15_23 0.88 +0.4 26,944 + -0.1 26,957 - +0.0 26,957 - +0.4 27,058 + +0.0 27,081 - -1.5 27,436 + -0.4 27,446 + +1.2 27,464 - -1.4 27,502 + +2.2 27,534 + -0.1 27,542 - -0.8 27,719 - +1.9 27,799 + +1.0 27,800 + -1.2 27,870 + HP15_24 0.22 +0.4 27,870 + HP15_24 0.22 -1.8 28,004 - HP15_24 0.69 +0.0 28,024 - HP15_24 0.76 -1.5 28,080 + -0.2 28,173 - +1.6 28,199 + +0.7 28,206 + -0.8 28,214 - -0.1 28,247 - -0.7 28,271 + -1.0 28,342 - HP15_25 0.10 -0.4 28,362 + HP15_25 0.13 -0.8 28,433 - HP15_25 0.21 -0.3 28,433 - HP15_25 0.21 -0.9 28,451 + HP15_25 0.23 -0.4 28,480 - HP15_25 0.27 +0.7 28,493 - HP15_25 0.28 +2.9 28,582 + HP15_25 0.39 +0.4 28,598 + HP15_25 0.41 -0.3 28,611 - HP15_25 0.42 +0.2 28,624 + HP15_25 0.44 -0.7 28,624 + HP15_25 0.44 +0.0 28,639 - HP15_25 0.46 +0.2 28,639 - HP15_25 0.46 -0.7 28,639 - HP15_25 0.46 -0.2 28,639 - HP15_25 0.46 +0.7 28,646 - HP15_25 0.47 -0.1 28,651 - HP15_25 0.47 +0.6 28,656 - HP15_25 0.48 -0.8 28,679 + HP15_25 0.51 +0.5 28,679 + HP15_25 0.51 -0.5 28,695 + HP15_25 0.53 +0.3 28,716 - HP15_25 0.55 -0.4 28,759 - HP15_25 0.60 +0.3 28,774 + HP15_25 0.62 +0.2 28,801 + HP15_25 0.65 +0.2 28,829 + HP15_25 0.69 +0.5 28,837 - HP15_25 0.70 -0.4 28,866 + HP15_25 0.73 +0.3 28,866 + HP15_25 0.73 -0.1 28,876 + HP15_25 0.74 -0.0 28,879 - HP15_25 0.75 -0.0 28,881 + HP15_25 0.75 -1.4 28,889 - HP15_25 0.76 -0.6 28,942 - HP15_25 0.82 -0.1 29,084 + -0.2 29,092 + +0.6
Or see this region's nucleotide sequence