Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2333 and HP15_2334 are separated by 51 nucleotides HP15_2334 and HP15_2335 are separated by 4 nucleotides HP15_2335 and HP15_2336 are separated by 42 nucleotides HP15_2336 and HP15_2337 are separated by 242 nucleotides
HP15_2333: HP15_2333 - conserved hypothetical protein, at 2,453,621 to 2,454,133
_2333
HP15_2334: HP15_2334 - conserved hypothetical protein, at 2,454,185 to 2,454,445
_2334
HP15_2335: HP15_2335 - SOS cell division inhibitor, at 2,454,450 to 2,454,941
_2335
HP15_2336: HP15_2336 - LexA repressor, at 2,454,984 to 2,455,592
_2336
HP15_2337: HP15_2337 - conserved hypothetical protein, at 2,455,835 to 2,456,812
_2337
Position (kb)
2454
2455
2456 Strain fitness (log2 ratio)
-2
-1
0
1 at 2454.248 kb on + strand, within HP15_2334 at 2454.432 kb on - strand at 2454.434 kb on + strand at 2454.435 kb on - strand at 2454.448 kb on + strand at 2454.456 kb on - strand at 2454.575 kb on + strand, within HP15_2335 at 2454.591 kb on + strand, within HP15_2335 at 2454.594 kb on - strand, within HP15_2335 at 2454.596 kb on + strand, within HP15_2335 at 2454.606 kb on + strand, within HP15_2335 at 2454.609 kb on - strand, within HP15_2335 at 2454.613 kb on + strand, within HP15_2335 at 2454.614 kb on - strand, within HP15_2335 at 2454.883 kb on + strand, within HP15_2335 at 2454.886 kb on - strand, within HP15_2335 at 2454.888 kb on + strand, within HP15_2335 at 2454.888 kb on + strand, within HP15_2335 at 2454.895 kb on + strand at 2454.896 kb on - strand at 2454.896 kb on - strand at 2454.963 kb on + strand at 2454.963 kb on + strand at 2454.982 kb on + strand at 2454.987 kb on + strand at 2454.995 kb on - strand at 2455.000 kb on - strand at 2455.000 kb on - strand at 2455.060 kb on - strand, within HP15_2336 at 2455.129 kb on + strand, within HP15_2336 at 2455.166 kb on + strand, within HP15_2336 at 2455.184 kb on + strand, within HP15_2336 at 2455.368 kb on + strand, within HP15_2336 at 2455.631 kb on + strand at 2455.639 kb on - strand at 2455.699 kb on + strand at 2455.707 kb on - strand at 2455.707 kb on - strand at 2455.770 kb on + strand at 2455.814 kb on + strand at 2455.814 kb on + strand at 2455.822 kb on - strand at 2455.904 kb on - strand at 2455.906 kb on + strand at 2455.994 kb on + strand, within HP15_2337 at 2456.013 kb on - strand, within HP15_2337 at 2456.103 kb on - strand, within HP15_2337 at 2456.164 kb on - strand, within HP15_2337 at 2456.180 kb on - strand, within HP15_2337 at 2456.206 kb on + strand, within HP15_2337 at 2456.332 kb on + strand, within HP15_2337 at 2456.510 kb on - strand, within HP15_2337 at 2456.591 kb on - strand, within HP15_2337
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,454,248 + HP15_2334 0.24 -0.5 2,454,432 - +0.2 2,454,434 + -0.1 2,454,435 - -2.1 2,454,448 + +1.2 2,454,456 - -0.8 2,454,575 + HP15_2335 0.25 +1.1 2,454,591 + HP15_2335 0.29 +0.6 2,454,594 - HP15_2335 0.29 +0.2 2,454,596 + HP15_2335 0.30 +0.8 2,454,606 + HP15_2335 0.32 +0.4 2,454,609 - HP15_2335 0.32 +0.3 2,454,613 + HP15_2335 0.33 -0.1 2,454,614 - HP15_2335 0.33 +1.2 2,454,883 + HP15_2335 0.88 +1.1 2,454,886 - HP15_2335 0.89 -0.1 2,454,888 + HP15_2335 0.89 -0.3 2,454,888 + HP15_2335 0.89 +0.8 2,454,895 + -0.0 2,454,896 - -0.1 2,454,896 - +0.3 2,454,963 + +0.2 2,454,963 + -0.0 2,454,982 + -0.6 2,454,987 + -0.5 2,454,995 - +0.3 2,455,000 - -0.2 2,455,000 - +0.2 2,455,060 - HP15_2336 0.12 -1.0 2,455,129 + HP15_2336 0.24 +0.9 2,455,166 + HP15_2336 0.30 -1.2 2,455,184 + HP15_2336 0.33 -1.7 2,455,368 + HP15_2336 0.63 -1.5 2,455,631 + +0.2 2,455,639 - -1.0 2,455,699 + +0.9 2,455,707 - -0.5 2,455,707 - +0.6 2,455,770 + -0.7 2,455,814 + -0.8 2,455,814 + +0.6 2,455,822 - -1.0 2,455,904 - -0.3 2,455,906 + +0.0 2,455,994 + HP15_2337 0.16 +0.2 2,456,013 - HP15_2337 0.18 -0.9 2,456,103 - HP15_2337 0.27 +0.7 2,456,164 - HP15_2337 0.34 +0.4 2,456,180 - HP15_2337 0.35 -2.1 2,456,206 + HP15_2337 0.38 +0.8 2,456,332 + HP15_2337 0.51 +0.3 2,456,510 - HP15_2337 0.69 +0.3 2,456,591 - HP15_2337 0.77 -0.1
Or see this region's nucleotide sequence