Strain Fitness in Marinobacter adhaerens HP15 around HP15_2321

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2320 and HP15_2321 are separated by 24 nucleotidesHP15_2321 and HP15_2322 are separated by 122 nucleotidesHP15_2322 and HP15_2323 overlap by 1 nucleotides HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675 _2320 HP15_2321: HP15_2321 - anti-sigma-factor antagonist, at 2,440,700 to 2,441,005 _2321 HP15_2322: HP15_2322 - flagellar FliJ protein, at 2,441,128 to 2,441,571 _2322 HP15_2323: HP15_2323 - flagellum-specific ATP synthase FliI, at 2,441,571 to 2,442,965 _2323 Position (kb) 2440 2441 2442Strain fitness (log2 ratio) -2 -1 0 1at 2439.712 kb on + strand, within HP15_2320at 2439.808 kb on + strand, within HP15_2320at 2440.108 kb on - strand, within HP15_2320at 2440.156 kb on + strand, within HP15_2320at 2440.177 kb on - strand, within HP15_2320at 2440.304 kb on - strand, within HP15_2320at 2440.373 kb on + strand, within HP15_2320at 2440.376 kb on - strand, within HP15_2320at 2440.530 kb on - strandat 2440.537 kb on + strandat 2440.650 kb on - strandat 2440.725 kb on + strandat 2440.742 kb on + strand, within HP15_2321at 2440.903 kb on + strand, within HP15_2321at 2441.058 kb on + strandat 2441.066 kb on - strandat 2441.074 kb on + strandat 2441.362 kb on - strand, within HP15_2322at 2441.388 kb on + strand, within HP15_2322at 2441.396 kb on - strand, within HP15_2322at 2441.510 kb on - strand, within HP15_2322at 2441.529 kb on + strandat 2441.529 kb on + strandat 2441.537 kb on - strandat 2441.545 kb on - strandat 2441.632 kb on - strandat 2441.699 kb on + strandat 2441.818 kb on - strand, within HP15_2323at 2441.919 kb on + strand, within HP15_2323

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
2,439,712 + HP15_2320 0.45 +1.3
2,439,808 + HP15_2320 0.51 +0.3
2,440,108 - HP15_2320 0.68 +0.2
2,440,156 + HP15_2320 0.70 -0.7
2,440,177 - HP15_2320 0.72 +0.9
2,440,304 - HP15_2320 0.79 +0.2
2,440,373 + HP15_2320 0.83 -1.6
2,440,376 - HP15_2320 0.83 +1.5
2,440,530 - -2.4
2,440,537 + +0.4
2,440,650 - -2.4
2,440,725 + +0.6
2,440,742 + HP15_2321 0.14 -0.3
2,440,903 + HP15_2321 0.66 -0.6
2,441,058 + +0.2
2,441,066 - +0.9
2,441,074 + -0.4
2,441,362 - HP15_2322 0.53 -1.2
2,441,388 + HP15_2322 0.59 -0.9
2,441,396 - HP15_2322 0.60 -1.2
2,441,510 - HP15_2322 0.86 +0.6
2,441,529 + -0.1
2,441,529 + +0.4
2,441,537 - +0.6
2,441,545 - -0.1
2,441,632 - +0.6
2,441,699 + -0.1
2,441,818 - HP15_2323 0.18 -0.1
2,441,919 + HP15_2323 0.25 +0.6

Or see this region's nucleotide sequence