Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2275 and HP15_2276 are separated by 2 nucleotides HP15_2276 and HP15_2277 are separated by 3 nucleotides HP15_2277 and HP15_2278 are separated by 45 nucleotides HP15_2278 and HP15_2279 are separated by 40 nucleotides HP15_2279 and HP15_2280 overlap by 1 nucleotides
HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813
_2275
HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370
_2276
HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516
_2277
HP15_2278: HP15_2278 - hypothetical protein, at 2,402,562 to 2,402,669
_2278
HP15_2279: HP15_2279 - cytochrome C biogenesis protein CcmH, at 2,402,710 to 2,403,183
_2279
HP15_2280: HP15_2280 - periplasmic protein thiol: disulfide oxidoreductase DsbE, at 2,403,183 to 2,403,719
_2280
Position (kb)
2401
2402
2403 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2400.374 kb on - strand, within HP15_2275 at 2400.374 kb on - strand, within HP15_2275 at 2400.453 kb on - strand, within HP15_2275 at 2400.498 kb on + strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.610 kb on + strand, within HP15_2275 at 2400.629 kb on - strand, within HP15_2275 at 2400.830 kb on - strand at 2400.916 kb on + strand, within HP15_2276 at 2401.038 kb on - strand, within HP15_2276 at 2401.108 kb on - strand, within HP15_2276 at 2401.116 kb on - strand, within HP15_2276 at 2401.157 kb on + strand, within HP15_2276 at 2401.187 kb on - strand, within HP15_2276 at 2401.717 kb on - strand, within HP15_2277 at 2401.785 kb on + strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,400,374 - HP15_2275 0.63 +1.2 2,400,374 - HP15_2275 0.63 +0.4 2,400,453 - HP15_2275 0.70 -0.8 2,400,498 + HP15_2275 0.73 +0.1 2,400,597 - HP15_2275 0.82 +1.0 2,400,597 - HP15_2275 0.82 -0.4 2,400,610 + HP15_2275 0.83 +0.3 2,400,629 - HP15_2275 0.84 +2.1 2,400,830 - -0.1 2,400,916 + HP15_2276 0.18 -0.4 2,401,038 - HP15_2276 0.40 +0.2 2,401,108 - HP15_2276 0.53 -0.5 2,401,116 - HP15_2276 0.54 +0.3 2,401,157 + HP15_2276 0.61 +0.1 2,401,187 - HP15_2276 0.67 -0.3 2,401,717 - HP15_2277 0.30 +0.0 2,401,785 + HP15_2277 0.36 -0.1 2,401,793 - HP15_2277 0.37 -0.6 2,401,793 - HP15_2277 0.37 -2.3
Or see this region's nucleotide sequence