Strain Fitness in Marinobacter adhaerens HP15 around HP15_218

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_217 and HP15_218 are separated by 122 nucleotidesHP15_218 and HP15_219 are separated by 20 nucleotidesHP15_219 and HP15_220 are separated by 150 nucleotides HP15_217: HP15_217 - glutamate--cysteine ligase, at 205,710 to 207,263 _217 HP15_218: HP15_218 - conserved hypothetical protein, at 207,386 to 207,601 _218 HP15_219: HP15_219 - flagellar basal body-associated protein FliL, at 207,622 to 208,071 _219 HP15_220: HP15_220 - disulfide bond formation protein B, at 208,222 to 208,629 _220 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1at 207.277 kb on - strandat 207.427 kb on + strand, within HP15_218at 207.455 kb on - strand, within HP15_218at 207.560 kb on - strand, within HP15_218at 208.110 kb on + strandat 208.282 kb on - strand, within HP15_220at 208.308 kb on + strand, within HP15_220at 208.444 kb on - strand, within HP15_220at 208.486 kb on - strand, within HP15_220at 208.505 kb on - strand, within HP15_220at 208.564 kb on + strand, within HP15_220at 208.572 kb on - strand, within HP15_220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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207,277 - -1.3
207,427 + HP15_218 0.19 +0.0
207,455 - HP15_218 0.32 -2.2
207,560 - HP15_218 0.81 -0.6
208,110 + -0.7
208,282 - HP15_220 0.15 +0.1
208,308 + HP15_220 0.21 -1.4
208,444 - HP15_220 0.54 -0.5
208,486 - HP15_220 0.65 -2.0
208,505 - HP15_220 0.69 -1.9
208,564 + HP15_220 0.84 -0.4
208,572 - HP15_220 0.86 +1.1

Or see this region's nucleotide sequence