Strain Fitness in Marinobacter adhaerens HP15 around HP15_2067

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2065 and HP15_2066 are separated by 5 nucleotidesHP15_2066 and HP15_2067 are separated by 72 nucleotidesHP15_2067 and HP15_2068 are separated by 105 nucleotidesHP15_2068 and HP15_2069 overlap by 13 nucleotides HP15_2065: HP15_2065 - biopolymer transport protein ExbD/TolR, at 2,165,869 to 2,166,294 _2065 HP15_2066: HP15_2066 - MotA/TolQ/ExbB proton channel family protein, at 2,166,300 to 2,166,926 _2066 HP15_2067: HP15_2067 - DNA internalization-related competence protein ComEC/Rec2, at 2,166,999 to 2,169,407 _2067 HP15_2068: HP15_2068 - conserved hypothetical protein, membrane, at 2,169,513 to 2,170,058 _2068 HP15_2069: HP15_2069 - lipoprotein-releasing system ATP-binding protein LolD, at 2,170,046 to 2,170,735 _2069 Position (kb) 2166 2167 2168 2169 2170Strain fitness (log2 ratio) -2 -1 0 1 2at 2166.348 kb on - strandat 2166.983 kb on + strandat 2167.016 kb on + strandat 2167.016 kb on + strandat 2167.024 kb on - strandat 2167.028 kb on + strandat 2167.042 kb on + strandat 2167.050 kb on - strandat 2167.149 kb on - strandat 2167.186 kb on + strandat 2167.188 kb on - strandat 2167.228 kb on + strandat 2167.236 kb on - strandat 2167.250 kb on - strand, within HP15_2067at 2167.393 kb on + strand, within HP15_2067at 2167.393 kb on + strand, within HP15_2067at 2167.435 kb on + strand, within HP15_2067at 2167.535 kb on + strand, within HP15_2067at 2167.691 kb on - strand, within HP15_2067at 2167.775 kb on - strand, within HP15_2067at 2167.861 kb on + strand, within HP15_2067at 2167.914 kb on + strand, within HP15_2067at 2167.994 kb on - strand, within HP15_2067at 2167.996 kb on + strand, within HP15_2067at 2168.006 kb on - strand, within HP15_2067at 2168.031 kb on - strand, within HP15_2067at 2168.122 kb on - strand, within HP15_2067at 2168.128 kb on - strand, within HP15_2067at 2168.229 kb on - strand, within HP15_2067at 2168.231 kb on + strand, within HP15_2067at 2168.239 kb on - strand, within HP15_2067at 2168.333 kb on - strand, within HP15_2067at 2168.414 kb on - strand, within HP15_2067at 2168.548 kb on + strand, within HP15_2067at 2168.573 kb on + strand, within HP15_2067at 2168.664 kb on - strand, within HP15_2067at 2168.668 kb on + strand, within HP15_2067at 2168.668 kb on + strand, within HP15_2067at 2168.684 kb on - strand, within HP15_2067at 2168.709 kb on - strand, within HP15_2067at 2168.828 kb on + strand, within HP15_2067at 2168.912 kb on - strand, within HP15_2067at 2168.974 kb on - strand, within HP15_2067at 2168.983 kb on + strand, within HP15_2067at 2168.991 kb on - strand, within HP15_2067at 2169.016 kb on + strand, within HP15_2067at 2169.027 kb on + strand, within HP15_2067at 2169.079 kb on + strand, within HP15_2067at 2169.193 kb on + strandat 2169.193 kb on + strandat 2169.201 kb on - strandat 2169.201 kb on - strandat 2169.201 kb on - strandat 2169.201 kb on - strandat 2169.216 kb on + strandat 2169.259 kb on + strandat 2169.284 kb on - strandat 2169.305 kb on + strandat 2169.355 kb on - strandat 2169.369 kb on + strandat 2169.817 kb on + strand, within HP15_2068

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,166,348 - +0.1
2,166,983 + -0.1
2,167,016 + -0.2
2,167,016 + +0.9
2,167,024 - +0.3
2,167,028 + +1.2
2,167,042 + +0.3
2,167,050 - -0.5
2,167,149 - -0.9
2,167,186 + +1.1
2,167,188 - +2.1
2,167,228 + +0.3
2,167,236 - +0.6
2,167,250 - HP15_2067 0.10 -0.2
2,167,393 + HP15_2067 0.16 -0.1
2,167,393 + HP15_2067 0.16 +0.6
2,167,435 + HP15_2067 0.18 +0.0
2,167,535 + HP15_2067 0.22 -0.1
2,167,691 - HP15_2067 0.29 -0.6
2,167,775 - HP15_2067 0.32 -0.6
2,167,861 + HP15_2067 0.36 +0.6
2,167,914 + HP15_2067 0.38 -0.5
2,167,994 - HP15_2067 0.41 -1.1
2,167,996 + HP15_2067 0.41 -0.0
2,168,006 - HP15_2067 0.42 -0.8
2,168,031 - HP15_2067 0.43 +1.2
2,168,122 - HP15_2067 0.47 -0.5
2,168,128 - HP15_2067 0.47 -2.7
2,168,229 - HP15_2067 0.51 -0.2
2,168,231 + HP15_2067 0.51 +0.8
2,168,239 - HP15_2067 0.51 +1.3
2,168,333 - HP15_2067 0.55 -0.1
2,168,414 - HP15_2067 0.59 -0.3
2,168,548 + HP15_2067 0.64 +0.4
2,168,573 + HP15_2067 0.65 -1.4
2,168,664 - HP15_2067 0.69 -0.2
2,168,668 + HP15_2067 0.69 -0.5
2,168,668 + HP15_2067 0.69 +0.1
2,168,684 - HP15_2067 0.70 -0.7
2,168,709 - HP15_2067 0.71 +0.4
2,168,828 + HP15_2067 0.76 -0.2
2,168,912 - HP15_2067 0.79 -1.4
2,168,974 - HP15_2067 0.82 -0.0
2,168,983 + HP15_2067 0.82 +0.5
2,168,991 - HP15_2067 0.83 -0.1
2,169,016 + HP15_2067 0.84 +1.1
2,169,027 + HP15_2067 0.84 +0.5
2,169,079 + HP15_2067 0.86 -0.1
2,169,193 + +0.2
2,169,193 + -0.2
2,169,201 - +1.8
2,169,201 - +0.9
2,169,201 - +1.8
2,169,201 - -0.4
2,169,216 + -0.3
2,169,259 + +0.2
2,169,284 - -1.3
2,169,305 + -1.6
2,169,355 - +0.8
2,169,369 + +0.5
2,169,817 + HP15_2068 0.56 +1.0

Or see this region's nucleotide sequence