Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2065 and HP15_2066 are separated by 5 nucleotides HP15_2066 and HP15_2067 are separated by 72 nucleotides HP15_2067 and HP15_2068 are separated by 105 nucleotides HP15_2068 and HP15_2069 overlap by 13 nucleotides
HP15_2065: HP15_2065 - biopolymer transport protein ExbD/TolR, at 2,165,869 to 2,166,294
_2065
HP15_2066: HP15_2066 - MotA/TolQ/ExbB proton channel family protein, at 2,166,300 to 2,166,926
_2066
HP15_2067: HP15_2067 - DNA internalization-related competence protein ComEC/Rec2, at 2,166,999 to 2,169,407
_2067
HP15_2068: HP15_2068 - conserved hypothetical protein, membrane, at 2,169,513 to 2,170,058
_2068
HP15_2069: HP15_2069 - lipoprotein-releasing system ATP-binding protein LolD, at 2,170,046 to 2,170,735
_2069
Position (kb)
2166
2167
2168
2169
2170 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2166.348 kb on - strand at 2166.983 kb on + strand at 2167.016 kb on + strand at 2167.016 kb on + strand at 2167.024 kb on - strand at 2167.028 kb on + strand at 2167.042 kb on + strand at 2167.050 kb on - strand at 2167.149 kb on - strand at 2167.186 kb on + strand at 2167.188 kb on - strand at 2167.228 kb on + strand at 2167.236 kb on - strand at 2167.250 kb on - strand, within HP15_2067 at 2167.393 kb on + strand, within HP15_2067 at 2167.393 kb on + strand, within HP15_2067 at 2167.435 kb on + strand, within HP15_2067 at 2167.535 kb on + strand, within HP15_2067 at 2167.691 kb on - strand, within HP15_2067 at 2167.775 kb on - strand, within HP15_2067 at 2167.861 kb on + strand, within HP15_2067 at 2167.914 kb on + strand, within HP15_2067 at 2167.994 kb on - strand, within HP15_2067 at 2167.996 kb on + strand, within HP15_2067 at 2168.006 kb on - strand, within HP15_2067 at 2168.031 kb on - strand, within HP15_2067 at 2168.122 kb on - strand, within HP15_2067 at 2168.128 kb on - strand, within HP15_2067 at 2168.229 kb on - strand, within HP15_2067 at 2168.231 kb on + strand, within HP15_2067 at 2168.239 kb on - strand, within HP15_2067 at 2168.333 kb on - strand, within HP15_2067 at 2168.414 kb on - strand, within HP15_2067 at 2168.548 kb on + strand, within HP15_2067 at 2168.573 kb on + strand, within HP15_2067 at 2168.664 kb on - strand, within HP15_2067 at 2168.668 kb on + strand, within HP15_2067 at 2168.668 kb on + strand, within HP15_2067 at 2168.684 kb on - strand, within HP15_2067 at 2168.709 kb on - strand, within HP15_2067 at 2168.828 kb on + strand, within HP15_2067 at 2168.912 kb on - strand, within HP15_2067 at 2168.974 kb on - strand, within HP15_2067 at 2168.983 kb on + strand, within HP15_2067 at 2168.991 kb on - strand, within HP15_2067 at 2169.016 kb on + strand, within HP15_2067 at 2169.027 kb on + strand, within HP15_2067 at 2169.079 kb on + strand, within HP15_2067 at 2169.193 kb on + strand at 2169.193 kb on + strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.216 kb on + strand at 2169.259 kb on + strand at 2169.284 kb on - strand at 2169.305 kb on + strand at 2169.355 kb on - strand at 2169.369 kb on + strand at 2169.817 kb on + strand, within HP15_2068
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,166,348 - +0.1 2,166,983 + -0.1 2,167,016 + -0.2 2,167,016 + +0.9 2,167,024 - +0.3 2,167,028 + +1.2 2,167,042 + +0.3 2,167,050 - -0.5 2,167,149 - -0.9 2,167,186 + +1.1 2,167,188 - +2.1 2,167,228 + +0.3 2,167,236 - +0.6 2,167,250 - HP15_2067 0.10 -0.2 2,167,393 + HP15_2067 0.16 -0.1 2,167,393 + HP15_2067 0.16 +0.6 2,167,435 + HP15_2067 0.18 +0.0 2,167,535 + HP15_2067 0.22 -0.1 2,167,691 - HP15_2067 0.29 -0.6 2,167,775 - HP15_2067 0.32 -0.6 2,167,861 + HP15_2067 0.36 +0.6 2,167,914 + HP15_2067 0.38 -0.5 2,167,994 - HP15_2067 0.41 -1.1 2,167,996 + HP15_2067 0.41 -0.0 2,168,006 - HP15_2067 0.42 -0.8 2,168,031 - HP15_2067 0.43 +1.2 2,168,122 - HP15_2067 0.47 -0.5 2,168,128 - HP15_2067 0.47 -2.7 2,168,229 - HP15_2067 0.51 -0.2 2,168,231 + HP15_2067 0.51 +0.8 2,168,239 - HP15_2067 0.51 +1.3 2,168,333 - HP15_2067 0.55 -0.1 2,168,414 - HP15_2067 0.59 -0.3 2,168,548 + HP15_2067 0.64 +0.4 2,168,573 + HP15_2067 0.65 -1.4 2,168,664 - HP15_2067 0.69 -0.2 2,168,668 + HP15_2067 0.69 -0.5 2,168,668 + HP15_2067 0.69 +0.1 2,168,684 - HP15_2067 0.70 -0.7 2,168,709 - HP15_2067 0.71 +0.4 2,168,828 + HP15_2067 0.76 -0.2 2,168,912 - HP15_2067 0.79 -1.4 2,168,974 - HP15_2067 0.82 -0.0 2,168,983 + HP15_2067 0.82 +0.5 2,168,991 - HP15_2067 0.83 -0.1 2,169,016 + HP15_2067 0.84 +1.1 2,169,027 + HP15_2067 0.84 +0.5 2,169,079 + HP15_2067 0.86 -0.1 2,169,193 + +0.2 2,169,193 + -0.2 2,169,201 - +1.8 2,169,201 - +0.9 2,169,201 - +1.8 2,169,201 - -0.4 2,169,216 + -0.3 2,169,259 + +0.2 2,169,284 - -1.3 2,169,305 + -1.6 2,169,355 - +0.8 2,169,369 + +0.5 2,169,817 + HP15_2068 0.56 +1.0
Or see this region's nucleotide sequence