Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2055 and HP15_2056 are separated by 145 nucleotides HP15_2056 and HP15_2057 are separated by 1 nucleotides HP15_2057 and HP15_2058 are separated by 85 nucleotides
HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331
_2055
HP15_2056: HP15_2056 - transcriptional regulator of AsnC/Lrp family protein, at 2,157,477 to 2,157,974
_2056
HP15_2057: HP15_2057 - transcriptional regulator, TetR family, at 2,157,976 to 2,158,632
_2057
HP15_2058: HP15_2058 - prolyl-tRNA synthetase, at 2,158,718 to 2,160,451
_2058
Position (kb)
2157
2158
2159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2157.026 kb on + strand, within HP15_2055 at 2157.200 kb on - strand at 2157.328 kb on - strand at 2157.772 kb on + strand, within HP15_2056 at 2157.780 kb on + strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.788 kb on - strand, within HP15_2056 at 2157.946 kb on - strand at 2157.951 kb on - strand at 2157.951 kb on - strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.013 kb on + strand at 2158.189 kb on - strand, within HP15_2057 at 2158.232 kb on - strand, within HP15_2057 at 2158.322 kb on - strand, within HP15_2057 at 2158.379 kb on + strand, within HP15_2057 at 2158.509 kb on + strand, within HP15_2057 at 2158.540 kb on + strand, within HP15_2057 at 2158.548 kb on - strand, within HP15_2057 at 2158.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,157,026 + HP15_2055 0.82 -0.9 2,157,200 - -0.4 2,157,328 - -0.1 2,157,772 + HP15_2056 0.59 +0.4 2,157,780 + HP15_2056 0.61 -0.0 2,157,788 - HP15_2056 0.62 +1.0 2,157,788 - HP15_2056 0.62 -1.1 2,157,946 - -0.2 2,157,951 - +2.0 2,157,951 - +2.8 2,158,013 + +0.5 2,158,013 + +0.2 2,158,013 + +2.1 2,158,189 - HP15_2057 0.32 +0.8 2,158,232 - HP15_2057 0.39 +2.1 2,158,322 - HP15_2057 0.53 +3.0 2,158,379 + HP15_2057 0.61 +0.1 2,158,509 + HP15_2057 0.81 -2.8 2,158,540 + HP15_2057 0.86 +1.2 2,158,548 - HP15_2057 0.87 +2.1 2,158,599 - +1.2
Or see this region's nucleotide sequence