Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2032 and HP15_tRNA36 are separated by 191 nucleotides HP15_tRNA36 and HP15_tRNA37 are separated by 68 nucleotides HP15_tRNA37 and HP15_2033 are separated by 85 nucleotides HP15_2033 and HP15_2034 are separated by 16 nucleotides HP15_2034 and HP15_2035 are separated by 67 nucleotides
HP15_2032: HP15_2032 - quinolinate synthetase complex, A subunit, at 2,132,218 to 2,133,279
_2032
HP15_tRNA36: HP15_tRNA36 - tRNA-Lys, at 2,133,471 to 2,133,546
_tRNA36
HP15_tRNA37: HP15_tRNA37 - tRNA-Lys, at 2,133,615 to 2,133,690
_tRNA37
HP15_2033: HP15_2033 - secreted protein containing Tol-Pal system, YbgF domain, at 2,133,776 to 2,134,522
_2033
HP15_2034: HP15_2034 - peptidoglycan-associated lipoprotein, at 2,134,539 to 2,135,111
_2034
HP15_2035: HP15_2035 - translocation protein TolB precursor, at 2,135,179 to 2,136,492
_2035
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2133.295 kb on - strand at 2133.331 kb on + strand at 2133.356 kb on + strand at 2134.010 kb on - strand, within HP15_2033 at 2134.028 kb on + strand, within HP15_2033 at 2134.093 kb on - strand, within HP15_2033 at 2134.195 kb on - strand, within HP15_2033 at 2134.350 kb on + strand, within HP15_2033 at 2134.439 kb on + strand, within HP15_2033 at 2134.711 kb on - strand, within HP15_2034 at 2135.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,133,295 - -0.0 2,133,331 + +0.8 2,133,356 + -0.8 2,134,010 - HP15_2033 0.31 -0.1 2,134,028 + HP15_2033 0.34 -3.4 2,134,093 - HP15_2033 0.42 +0.3 2,134,195 - HP15_2033 0.56 +2.6 2,134,350 + HP15_2033 0.77 -0.8 2,134,439 + HP15_2033 0.89 -1.7 2,134,711 - HP15_2034 0.30 +1.4 2,135,193 - +0.6
Or see this region's nucleotide sequence