Strain Fitness in Marinobacter adhaerens HP15 around HP15_2016

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2015 and HP15_2016 are separated by 101 nucleotidesHP15_2016 and HP15_2017 overlap by 4 nucleotidesHP15_2017 and HP15_2018 overlap by 14 nucleotides HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195 _2015 HP15_2016: HP15_2016 - inner-membrane translocator, at 2,117,297 to 2,118,145 _2016 HP15_2017: HP15_2017 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,118,142 to 2,118,945 _2017 HP15_2018: HP15_2018 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,118,932 to 2,119,588 _2018 Position (kb) 2117 2118 2119Strain fitness (log2 ratio) -1 0 1 2 3at 2116.342 kb on + strandat 2116.547 kb on + strand, within HP15_2015at 2116.559 kb on + strand, within HP15_2015at 2116.567 kb on - strand, within HP15_2015at 2116.615 kb on + strand, within HP15_2015at 2116.631 kb on + strand, within HP15_2015at 2116.639 kb on - strand, within HP15_2015at 2116.696 kb on - strand, within HP15_2015at 2116.697 kb on - strand, within HP15_2015at 2116.703 kb on + strand, within HP15_2015at 2116.785 kb on + strand, within HP15_2015at 2116.797 kb on - strand, within HP15_2015at 2116.797 kb on - strand, within HP15_2015at 2116.848 kb on + strand, within HP15_2015at 2116.975 kb on + strand, within HP15_2015at 2117.109 kb on - strandat 2117.127 kb on + strandat 2117.300 kb on + strandat 2117.307 kb on + strandat 2117.307 kb on + strandat 2117.308 kb on - strandat 2117.308 kb on - strandat 2117.322 kb on + strandat 2117.363 kb on - strandat 2117.377 kb on - strandat 2117.421 kb on - strand, within HP15_2016at 2117.801 kb on - strand, within HP15_2016at 2117.801 kb on - strand, within HP15_2016at 2117.857 kb on + strand, within HP15_2016at 2117.944 kb on - strand, within HP15_2016at 2118.026 kb on + strand, within HP15_2016at 2118.092 kb on + strandat 2118.259 kb on - strand, within HP15_2017at 2118.299 kb on + strand, within HP15_2017at 2118.314 kb on - strand, within HP15_2017at 2118.582 kb on + strand, within HP15_2017at 2118.590 kb on - strand, within HP15_2017at 2118.601 kb on + strand, within HP15_2017at 2118.726 kb on - strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.782 kb on - strand, within HP15_2017at 2118.808 kb on + strand, within HP15_2017at 2118.833 kb on + strand, within HP15_2017at 2119.041 kb on + strand, within HP15_2018

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,116,342 + +0.1
2,116,547 + HP15_2015 0.28 +0.5
2,116,559 + HP15_2015 0.29 +0.4
2,116,567 - HP15_2015 0.30 -0.7
2,116,615 + HP15_2015 0.35 -0.6
2,116,631 + HP15_2015 0.37 -0.4
2,116,639 - HP15_2015 0.38 -1.7
2,116,696 - HP15_2015 0.44 +0.1
2,116,697 - HP15_2015 0.44 +2.8
2,116,703 + HP15_2015 0.45 +0.2
2,116,785 + HP15_2015 0.54 -1.0
2,116,797 - HP15_2015 0.56 +0.4
2,116,797 - HP15_2015 0.56 +1.4
2,116,848 + HP15_2015 0.61 +0.2
2,116,975 + HP15_2015 0.75 +0.4
2,117,109 - -0.3
2,117,127 + +0.1
2,117,300 + +0.4
2,117,307 + +0.8
2,117,307 + -0.7
2,117,308 - -0.0
2,117,308 - -0.7
2,117,322 + +0.0
2,117,363 - -0.5
2,117,377 - -0.3
2,117,421 - HP15_2016 0.15 +0.6
2,117,801 - HP15_2016 0.59 -1.5
2,117,801 - HP15_2016 0.59 +0.2
2,117,857 + HP15_2016 0.66 -1.1
2,117,944 - HP15_2016 0.76 -0.7
2,118,026 + HP15_2016 0.86 +0.3
2,118,092 + +0.1
2,118,259 - HP15_2017 0.15 -0.8
2,118,299 + HP15_2017 0.20 -0.2
2,118,314 - HP15_2017 0.21 +1.1
2,118,582 + HP15_2017 0.55 +0.5
2,118,590 - HP15_2017 0.56 +0.2
2,118,601 + HP15_2017 0.57 +0.1
2,118,726 - HP15_2017 0.73 -0.0
2,118,774 + HP15_2017 0.79 -0.2
2,118,774 + HP15_2017 0.79 -0.2
2,118,782 - HP15_2017 0.80 +0.8
2,118,808 + HP15_2017 0.83 +0.2
2,118,833 + HP15_2017 0.86 +0.8
2,119,041 + HP15_2018 0.17 -0.2

Or see this region's nucleotide sequence