Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2015 and HP15_2016 are separated by 101 nucleotides HP15_2016 and HP15_2017 overlap by 4 nucleotides HP15_2017 and HP15_2018 overlap by 14 nucleotides
HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195
_2015
HP15_2016: HP15_2016 - inner-membrane translocator, at 2,117,297 to 2,118,145
_2016
HP15_2017: HP15_2017 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,118,142 to 2,118,945
_2017
HP15_2018: HP15_2018 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,118,932 to 2,119,588
_2018
Position (kb)
2117
2118
2119 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2116.342 kb on + strand at 2116.547 kb on + strand, within HP15_2015 at 2116.559 kb on + strand, within HP15_2015 at 2116.567 kb on - strand, within HP15_2015 at 2116.615 kb on + strand, within HP15_2015 at 2116.631 kb on + strand, within HP15_2015 at 2116.639 kb on - strand, within HP15_2015 at 2116.696 kb on - strand, within HP15_2015 at 2116.697 kb on - strand, within HP15_2015 at 2116.703 kb on + strand, within HP15_2015 at 2116.785 kb on + strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.848 kb on + strand, within HP15_2015 at 2116.975 kb on + strand, within HP15_2015 at 2117.109 kb on - strand at 2117.127 kb on + strand at 2117.300 kb on + strand at 2117.307 kb on + strand at 2117.307 kb on + strand at 2117.308 kb on - strand at 2117.308 kb on - strand at 2117.322 kb on + strand at 2117.363 kb on - strand at 2117.377 kb on - strand at 2117.421 kb on - strand, within HP15_2016 at 2117.801 kb on - strand, within HP15_2016 at 2117.801 kb on - strand, within HP15_2016 at 2117.857 kb on + strand, within HP15_2016 at 2117.944 kb on - strand, within HP15_2016 at 2118.026 kb on + strand, within HP15_2016 at 2118.092 kb on + strand at 2118.259 kb on - strand, within HP15_2017 at 2118.299 kb on + strand, within HP15_2017 at 2118.314 kb on - strand, within HP15_2017 at 2118.582 kb on + strand, within HP15_2017 at 2118.590 kb on - strand, within HP15_2017 at 2118.601 kb on + strand, within HP15_2017 at 2118.726 kb on - strand, within HP15_2017 at 2118.774 kb on + strand, within HP15_2017 at 2118.774 kb on + strand, within HP15_2017 at 2118.782 kb on - strand, within HP15_2017 at 2118.808 kb on + strand, within HP15_2017 at 2118.833 kb on + strand, within HP15_2017 at 2119.041 kb on + strand, within HP15_2018
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,116,342 + +0.1 2,116,547 + HP15_2015 0.28 +0.5 2,116,559 + HP15_2015 0.29 +0.4 2,116,567 - HP15_2015 0.30 -0.7 2,116,615 + HP15_2015 0.35 -0.6 2,116,631 + HP15_2015 0.37 -0.4 2,116,639 - HP15_2015 0.38 -1.7 2,116,696 - HP15_2015 0.44 +0.1 2,116,697 - HP15_2015 0.44 +2.8 2,116,703 + HP15_2015 0.45 +0.2 2,116,785 + HP15_2015 0.54 -1.0 2,116,797 - HP15_2015 0.56 +0.4 2,116,797 - HP15_2015 0.56 +1.4 2,116,848 + HP15_2015 0.61 +0.2 2,116,975 + HP15_2015 0.75 +0.4 2,117,109 - -0.3 2,117,127 + +0.1 2,117,300 + +0.4 2,117,307 + +0.8 2,117,307 + -0.7 2,117,308 - -0.0 2,117,308 - -0.7 2,117,322 + +0.0 2,117,363 - -0.5 2,117,377 - -0.3 2,117,421 - HP15_2016 0.15 +0.6 2,117,801 - HP15_2016 0.59 -1.5 2,117,801 - HP15_2016 0.59 +0.2 2,117,857 + HP15_2016 0.66 -1.1 2,117,944 - HP15_2016 0.76 -0.7 2,118,026 + HP15_2016 0.86 +0.3 2,118,092 + +0.1 2,118,259 - HP15_2017 0.15 -0.8 2,118,299 + HP15_2017 0.20 -0.2 2,118,314 - HP15_2017 0.21 +1.1 2,118,582 + HP15_2017 0.55 +0.5 2,118,590 - HP15_2017 0.56 +0.2 2,118,601 + HP15_2017 0.57 +0.1 2,118,726 - HP15_2017 0.73 -0.0 2,118,774 + HP15_2017 0.79 -0.2 2,118,774 + HP15_2017 0.79 -0.2 2,118,782 - HP15_2017 0.80 +0.8 2,118,808 + HP15_2017 0.83 +0.2 2,118,833 + HP15_2017 0.86 +0.8 2,119,041 + HP15_2018 0.17 -0.2
Or see this region's nucleotide sequence