Strain Fitness in Marinobacter adhaerens HP15 around HP15_1999

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1997 and HP15_1998 overlap by 1 nucleotidesHP15_1998 and HP15_1999 overlap by 4 nucleotidesHP15_1999 and HP15_2000 are separated by 159 nucleotidesHP15_2000 and HP15_2001 are separated by 70 nucleotidesHP15_2001 and HP15_2002 are separated by 12 nucleotides HP15_1997: HP15_1997 - hypothetical protein, at 2,103,522 to 2,104,019 _1997 HP15_1998: HP15_1998 - conserved hypothetical protein, at 2,104,019 to 2,104,771 _1998 HP15_1999: HP15_1999 - hypothetical protein, at 2,104,768 to 2,105,268 _1999 HP15_2000: HP15_2000 - conserved hypothetical protein, at 2,105,428 to 2,105,706 _2000 HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061 _2001 HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415 _2002 Position (kb) 2104 2105 2106Strain fitness (log2 ratio) -1 0 1 2at 2103.832 kb on + strand, within HP15_1997at 2103.840 kb on - strand, within HP15_1997at 2103.956 kb on - strand, within HP15_1997at 2103.977 kb on + strandat 2104.024 kb on - strandat 2104.114 kb on - strand, within HP15_1998at 2104.117 kb on + strand, within HP15_1998at 2104.122 kb on + strand, within HP15_1998at 2104.137 kb on + strand, within HP15_1998at 2104.145 kb on - strand, within HP15_1998at 2104.175 kb on - strand, within HP15_1998at 2104.205 kb on - strand, within HP15_1998at 2104.245 kb on - strand, within HP15_1998at 2104.392 kb on + strand, within HP15_1998at 2104.578 kb on - strand, within HP15_1998at 2104.609 kb on + strand, within HP15_1998at 2104.619 kb on - strand, within HP15_1998at 2104.651 kb on - strand, within HP15_1998at 2104.854 kb on - strand, within HP15_1999at 2104.924 kb on - strand, within HP15_1999at 2104.975 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.115 kb on - strand, within HP15_1999at 2105.134 kb on - strand, within HP15_1999at 2105.277 kb on - strandat 2105.542 kb on - strand, within HP15_2000at 2105.542 kb on - strand, within HP15_2000at 2105.634 kb on - strand, within HP15_2000at 2105.940 kb on - strand, within HP15_2001at 2105.953 kb on - strand, within HP15_2001at 2106.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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2,103,832 + HP15_1997 0.62 -0.1
2,103,840 - HP15_1997 0.64 -0.1
2,103,956 - HP15_1997 0.87 -0.4
2,103,977 + +2.1
2,104,024 - +0.5
2,104,114 - HP15_1998 0.13 -0.1
2,104,117 + HP15_1998 0.13 -0.6
2,104,122 + HP15_1998 0.14 +0.9
2,104,137 + HP15_1998 0.16 -0.3
2,104,145 - HP15_1998 0.17 +0.1
2,104,175 - HP15_1998 0.21 -0.4
2,104,205 - HP15_1998 0.25 +2.4
2,104,245 - HP15_1998 0.30 +0.1
2,104,392 + HP15_1998 0.50 -0.8
2,104,578 - HP15_1998 0.74 -0.2
2,104,609 + HP15_1998 0.78 +0.8
2,104,619 - HP15_1998 0.80 -0.7
2,104,651 - HP15_1998 0.84 +0.3
2,104,854 - HP15_1999 0.17 -0.9
2,104,924 - HP15_1999 0.31 +0.1
2,104,975 - HP15_1999 0.41 -0.7
2,105,051 - HP15_1999 0.56 +0.6
2,105,051 - HP15_1999 0.56 -0.8
2,105,051 - HP15_1999 0.56 -1.2
2,105,051 - HP15_1999 0.56 +0.8
2,105,115 - HP15_1999 0.69 +0.8
2,105,134 - HP15_1999 0.73 -0.7
2,105,277 - +0.8
2,105,542 - HP15_2000 0.41 +0.8
2,105,542 - HP15_2000 0.41 -1.1
2,105,634 - HP15_2000 0.74 +1.8
2,105,940 - HP15_2001 0.57 +0.0
2,105,953 - HP15_2001 0.62 -0.7
2,106,089 - -0.4

Or see this region's nucleotide sequence