Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1997 and HP15_1998 overlap by 1 nucleotides HP15_1998 and HP15_1999 overlap by 4 nucleotides HP15_1999 and HP15_2000 are separated by 159 nucleotides HP15_2000 and HP15_2001 are separated by 70 nucleotides HP15_2001 and HP15_2002 are separated by 12 nucleotides
HP15_1997: HP15_1997 - hypothetical protein, at 2,103,522 to 2,104,019
_1997
HP15_1998: HP15_1998 - conserved hypothetical protein, at 2,104,019 to 2,104,771
_1998
HP15_1999: HP15_1999 - hypothetical protein, at 2,104,768 to 2,105,268
_1999
HP15_2000: HP15_2000 - conserved hypothetical protein, at 2,105,428 to 2,105,706
_2000
HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061
_2001
HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415
_2002
Position (kb)
2104
2105
2106 Strain fitness (log2 ratio)
-1
0
1
2 at 2103.832 kb on + strand, within HP15_1997 at 2103.840 kb on - strand, within HP15_1997 at 2103.956 kb on - strand, within HP15_1997 at 2103.977 kb on + strand at 2104.024 kb on - strand at 2104.114 kb on - strand, within HP15_1998 at 2104.117 kb on + strand, within HP15_1998 at 2104.122 kb on + strand, within HP15_1998 at 2104.137 kb on + strand, within HP15_1998 at 2104.145 kb on - strand, within HP15_1998 at 2104.175 kb on - strand, within HP15_1998 at 2104.205 kb on - strand, within HP15_1998 at 2104.245 kb on - strand, within HP15_1998 at 2104.392 kb on + strand, within HP15_1998 at 2104.578 kb on - strand, within HP15_1998 at 2104.609 kb on + strand, within HP15_1998 at 2104.619 kb on - strand, within HP15_1998 at 2104.651 kb on - strand, within HP15_1998 at 2104.854 kb on - strand, within HP15_1999 at 2104.924 kb on - strand, within HP15_1999 at 2104.975 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.115 kb on - strand, within HP15_1999 at 2105.134 kb on - strand, within HP15_1999 at 2105.277 kb on - strand at 2105.542 kb on - strand, within HP15_2000 at 2105.542 kb on - strand, within HP15_2000 at 2105.634 kb on - strand, within HP15_2000 at 2105.940 kb on - strand, within HP15_2001 at 2105.953 kb on - strand, within HP15_2001 at 2106.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,103,832 + HP15_1997 0.62 -0.1 2,103,840 - HP15_1997 0.64 -0.1 2,103,956 - HP15_1997 0.87 -0.4 2,103,977 + +2.1 2,104,024 - +0.5 2,104,114 - HP15_1998 0.13 -0.1 2,104,117 + HP15_1998 0.13 -0.6 2,104,122 + HP15_1998 0.14 +0.9 2,104,137 + HP15_1998 0.16 -0.3 2,104,145 - HP15_1998 0.17 +0.1 2,104,175 - HP15_1998 0.21 -0.4 2,104,205 - HP15_1998 0.25 +2.4 2,104,245 - HP15_1998 0.30 +0.1 2,104,392 + HP15_1998 0.50 -0.8 2,104,578 - HP15_1998 0.74 -0.2 2,104,609 + HP15_1998 0.78 +0.8 2,104,619 - HP15_1998 0.80 -0.7 2,104,651 - HP15_1998 0.84 +0.3 2,104,854 - HP15_1999 0.17 -0.9 2,104,924 - HP15_1999 0.31 +0.1 2,104,975 - HP15_1999 0.41 -0.7 2,105,051 - HP15_1999 0.56 +0.6 2,105,051 - HP15_1999 0.56 -0.8 2,105,051 - HP15_1999 0.56 -1.2 2,105,051 - HP15_1999 0.56 +0.8 2,105,115 - HP15_1999 0.69 +0.8 2,105,134 - HP15_1999 0.73 -0.7 2,105,277 - +0.8 2,105,542 - HP15_2000 0.41 +0.8 2,105,542 - HP15_2000 0.41 -1.1 2,105,634 - HP15_2000 0.74 +1.8 2,105,940 - HP15_2001 0.57 +0.0 2,105,953 - HP15_2001 0.62 -0.7 2,106,089 - -0.4
Or see this region's nucleotide sequence