Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1899 and HP15_1900 are separated by 11 nucleotides HP15_1900 and HP15_1901 are separated by 32 nucleotides
HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943
_1899
HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479
_1900
HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798
_1901
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-2
-1
0
1 at 2008.985 kb on - strand at 2009.053 kb on + strand, within HP15_1899 at 2009.100 kb on - strand, within HP15_1899 at 2009.100 kb on - strand, within HP15_1899 at 2009.137 kb on + strand, within HP15_1899 at 2009.306 kb on - strand, within HP15_1899 at 2009.321 kb on + strand, within HP15_1899 at 2009.340 kb on + strand, within HP15_1899 at 2009.340 kb on + strand, within HP15_1899 at 2009.452 kb on - strand, within HP15_1899 at 2009.463 kb on - strand, within HP15_1899 at 2009.477 kb on + strand, within HP15_1899 at 2009.478 kb on + strand, within HP15_1899 at 2009.604 kb on - strand, within HP15_1899 at 2009.692 kb on + strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.783 kb on + strand, within HP15_1899 at 2009.801 kb on + strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.819 kb on - strand, within HP15_1899 at 2010.302 kb on - strand, within HP15_1900 at 2010.395 kb on - strand, within HP15_1900 at 2010.548 kb on + strand at 2010.601 kb on + strand at 2010.616 kb on + strand at 2010.624 kb on - strand at 2010.668 kb on - strand, within HP15_1901 at 2010.701 kb on + strand, within HP15_1901 at 2010.757 kb on + strand, within HP15_1901 at 2010.907 kb on - strand, within HP15_1901 at 2011.047 kb on - strand, within HP15_1901 at 2011.063 kb on + strand, within HP15_1901 at 2011.209 kb on + strand, within HP15_1901 at 2011.211 kb on - strand, within HP15_1901 at 2011.234 kb on + strand, within HP15_1901 at 2011.451 kb on - strand, within HP15_1901
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,008,985 - -1.3 2,009,053 + HP15_1899 0.13 +0.5 2,009,100 - HP15_1899 0.18 -0.4 2,009,100 - HP15_1899 0.18 +0.5 2,009,137 + HP15_1899 0.21 +1.7 2,009,306 - HP15_1899 0.38 -1.1 2,009,321 + HP15_1899 0.39 +0.8 2,009,340 + HP15_1899 0.41 -0.4 2,009,340 + HP15_1899 0.41 +0.1 2,009,452 - HP15_1899 0.52 +0.5 2,009,463 - HP15_1899 0.53 -0.1 2,009,477 + HP15_1899 0.54 -1.7 2,009,478 + HP15_1899 0.55 +0.3 2,009,604 - HP15_1899 0.67 -2.6 2,009,692 + HP15_1899 0.75 +0.8 2,009,722 - HP15_1899 0.78 -0.1 2,009,722 - HP15_1899 0.78 +1.2 2,009,722 - HP15_1899 0.78 +0.2 2,009,783 + HP15_1899 0.84 +0.3 2,009,801 + HP15_1899 0.86 +0.5 2,009,801 - HP15_1899 0.86 -1.3 2,009,801 - HP15_1899 0.86 +0.2 2,009,819 - HP15_1899 0.88 +1.7 2,010,302 - HP15_1900 0.66 -0.3 2,010,395 - HP15_1900 0.84 -1.4 2,010,548 + -1.3 2,010,601 + -1.1 2,010,616 + -0.5 2,010,624 - -0.1 2,010,668 - HP15_1901 0.12 +0.6 2,010,701 + HP15_1901 0.15 -0.9 2,010,757 + HP15_1901 0.19 -0.3 2,010,907 - HP15_1901 0.31 +0.0 2,011,047 - HP15_1901 0.42 +0.4 2,011,063 + HP15_1901 0.43 -0.1 2,011,209 + HP15_1901 0.54 +1.1 2,011,211 - HP15_1901 0.54 +0.1 2,011,234 + HP15_1901 0.56 -0.7 2,011,451 - HP15_1901 0.73 -0.7
Or see this region's nucleotide sequence