Strain Fitness in Marinobacter adhaerens HP15 around HP15_1895

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1894 and HP15_1895 are separated by 156 nucleotidesHP15_1895 and HP15_1896 are separated by 96 nucleotides HP15_1894: HP15_1894 - eight transmembrane protein EpsH-like protein, at 2,001,875 to 2,003,290 _1894 HP15_1895: HP15_1895 - secreted protein containing PEP-CTERM bacterial domain, at 2,003,447 to 2,003,950 _1895 HP15_1896: HP15_1896 - polysaccharide biosynthesis protein, at 2,004,047 to 2,005,492 _1896 Position (kb) 2003 2004Strain fitness (log2 ratio) -1 0 1 2at 2002.473 kb on - strand, within HP15_1894at 2002.857 kb on + strand, within HP15_1894at 2002.892 kb on - strand, within HP15_1894at 2002.892 kb on - strand, within HP15_1894at 2002.947 kb on - strand, within HP15_1894at 2003.037 kb on - strand, within HP15_1894at 2003.062 kb on + strand, within HP15_1894at 2003.084 kb on + strand, within HP15_1894at 2003.084 kb on + strand, within HP15_1894at 2003.092 kb on - strand, within HP15_1894at 2003.092 kb on - strand, within HP15_1894at 2003.092 kb on - strand, within HP15_1894at 2003.228 kb on + strandat 2003.236 kb on - strandat 2003.236 kb on - strandat 2003.262 kb on - strandat 2003.280 kb on - strandat 2003.394 kb on + strandat 2003.600 kb on + strand, within HP15_1895at 2003.600 kb on + strand, within HP15_1895at 2003.608 kb on - strand, within HP15_1895at 2004.139 kb on - strandat 2004.274 kb on + strand, within HP15_1896at 2004.282 kb on - strand, within HP15_1896at 2004.381 kb on + strand, within HP15_1896at 2004.386 kb on + strand, within HP15_1896at 2004.402 kb on + strand, within HP15_1896at 2004.440 kb on - strand, within HP15_1896at 2004.606 kb on + strand, within HP15_1896at 2004.617 kb on + strand, within HP15_1896at 2004.702 kb on + strand, within HP15_1896at 2004.931 kb on + strand, within HP15_1896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
2,002,473 - HP15_1894 0.42 -0.5
2,002,857 + HP15_1894 0.69 +0.3
2,002,892 - HP15_1894 0.72 -0.9
2,002,892 - HP15_1894 0.72 -0.3
2,002,947 - HP15_1894 0.76 -0.5
2,003,037 - HP15_1894 0.82 -1.3
2,003,062 + HP15_1894 0.84 -0.4
2,003,084 + HP15_1894 0.85 -0.5
2,003,084 + HP15_1894 0.85 +0.5
2,003,092 - HP15_1894 0.86 -0.6
2,003,092 - HP15_1894 0.86 +0.1
2,003,092 - HP15_1894 0.86 -0.9
2,003,228 + -0.3
2,003,236 - +0.0
2,003,236 - -0.7
2,003,262 - +0.1
2,003,280 - +0.1
2,003,394 + -0.7
2,003,600 + HP15_1895 0.30 -1.3
2,003,600 + HP15_1895 0.30 -0.8
2,003,608 - HP15_1895 0.32 +0.1
2,004,139 - +2.2
2,004,274 + HP15_1896 0.16 +0.2
2,004,282 - HP15_1896 0.16 -0.2
2,004,381 + HP15_1896 0.23 -0.0
2,004,386 + HP15_1896 0.23 +1.5
2,004,402 + HP15_1896 0.25 -0.3
2,004,440 - HP15_1896 0.27 -0.8
2,004,606 + HP15_1896 0.39 +0.9
2,004,617 + HP15_1896 0.39 -0.0
2,004,702 + HP15_1896 0.45 +1.8
2,004,931 + HP15_1896 0.61 -0.3

Or see this region's nucleotide sequence