Strain Fitness in Marinobacter adhaerens HP15 around HP15_1879

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1878 and HP15_1879 are separated by 24 nucleotidesHP15_1879 and HP15_1880 overlap by 1 nucleotidesHP15_1880 and HP15_1881 overlap by 4 nucleotidesHP15_1881 and HP15_1882 overlap by 4 nucleotides HP15_1878: HP15_1878 - von Willebrand factor, type A, at 1,983,429 to 1,985,174 _1878 HP15_1879: HP15_1879 - conserved hypothetical protein, membrane, at 1,985,199 to 1,985,543 _1879 HP15_1880: HP15_1880 - uncharacterized conserved protein UCP006173, at 1,985,543 to 1,985,989 _1880 HP15_1881: HP15_1881 - YcgL domain protein, at 1,985,986 to 1,986,279 _1881 HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433 _1882 Position (kb) 1985 1986Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1984.201 kb on - strand, within HP15_1878at 1984.225 kb on + strand, within HP15_1878at 1984.396 kb on - strand, within HP15_1878at 1984.606 kb on + strand, within HP15_1878at 1984.614 kb on - strand, within HP15_1878at 1984.632 kb on - strand, within HP15_1878at 1984.749 kb on - strand, within HP15_1878at 1984.766 kb on - strand, within HP15_1878at 1984.797 kb on + strand, within HP15_1878at 1984.986 kb on + strand, within HP15_1878at 1984.988 kb on + strand, within HP15_1878at 1985.104 kb on + strandat 1985.135 kb on + strandat 1985.236 kb on + strand, within HP15_1879at 1985.717 kb on + strand, within HP15_1880at 1985.725 kb on - strand, within HP15_1880at 1985.762 kb on - strand, within HP15_1880at 1985.779 kb on - strand, within HP15_1880at 1985.789 kb on - strand, within HP15_1880at 1985.853 kb on + strand, within HP15_1880at 1986.000 kb on + strandat 1986.125 kb on + strand, within HP15_1881at 1986.230 kb on - strand, within HP15_1881at 1986.492 kb on - strand, within HP15_1882

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
1,984,201 - HP15_1878 0.44 +0.1
1,984,225 + HP15_1878 0.46 +0.6
1,984,396 - HP15_1878 0.55 +0.7
1,984,606 + HP15_1878 0.67 +2.7
1,984,614 - HP15_1878 0.68 -0.3
1,984,632 - HP15_1878 0.69 -0.3
1,984,749 - HP15_1878 0.76 -0.6
1,984,766 - HP15_1878 0.77 +1.6
1,984,797 + HP15_1878 0.78 +0.9
1,984,986 + HP15_1878 0.89 -0.9
1,984,988 + HP15_1878 0.89 -0.3
1,985,104 + -2.0
1,985,135 + -0.3
1,985,236 + HP15_1879 0.11 -0.8
1,985,717 + HP15_1880 0.39 +2.9
1,985,725 - HP15_1880 0.41 -0.1
1,985,762 - HP15_1880 0.49 +0.4
1,985,779 - HP15_1880 0.53 -0.3
1,985,789 - HP15_1880 0.55 +0.2
1,985,853 + HP15_1880 0.69 +0.2
1,986,000 + +1.1
1,986,125 + HP15_1881 0.47 -0.6
1,986,230 - HP15_1881 0.83 +1.8
1,986,492 - HP15_1882 0.19 +0.6

Or see this region's nucleotide sequence