Strain Fitness in Marinobacter adhaerens HP15 around HP15_1796

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1795 and HP15_1796 overlap by 8 nucleotidesHP15_1796 and HP15_1797 are separated by 74 nucleotides HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148 _1795 HP15_1796: HP15_1796 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 1,889,141 to 1,889,647 _1796 HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723 _1797 Position (kb) 1889 1890Strain fitness (log2 ratio) -1 0 1at 1888.267 kb on + strand, within HP15_1795at 1889.200 kb on - strand, within HP15_1796at 1889.817 kb on - strandat 1889.931 kb on + strand, within HP15_1797at 1889.939 kb on - strand, within HP15_1797at 1889.958 kb on - strand, within HP15_1797at 1890.002 kb on + strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.161 kb on + strand, within HP15_1797at 1890.262 kb on - strand, within HP15_1797at 1890.342 kb on - strand, within HP15_1797at 1890.382 kb on + strand, within HP15_1797at 1890.548 kb on + strand, within HP15_1797

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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1,888,267 + HP15_1795 0.46 +0.2
1,889,200 - HP15_1796 0.12 -0.8
1,889,817 - +0.2
1,889,931 + HP15_1797 0.21 -0.0
1,889,939 - HP15_1797 0.22 +0.2
1,889,958 - HP15_1797 0.24 +0.0
1,890,002 + HP15_1797 0.28 -0.6
1,890,010 - HP15_1797 0.29 -0.8
1,890,010 - HP15_1797 0.29 +0.2
1,890,161 + HP15_1797 0.44 -0.2
1,890,262 - HP15_1797 0.54 +1.3
1,890,342 - HP15_1797 0.62 +0.3
1,890,382 + HP15_1797 0.66 -0.5
1,890,548 + HP15_1797 0.82 -0.5

Or see this region's nucleotide sequence