Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1762 and HP15_1763 are separated by 60 nucleotides HP15_1763 and HP15_1764 are separated by 14 nucleotides HP15_1764 and HP15_1765 are separated by 380 nucleotides
HP15_1762: HP15_1762 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,860,350 to 1,861,417
_1762
HP15_1763: HP15_1763 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 1,861,478 to 1,861,969
_1763
HP15_1764: HP15_1764 - two-component response regulator, at 1,861,984 to 1,862,925
_1764
HP15_1765: HP15_1765 - HD superfamily phosphohydrolase, at 1,863,306 to 1,864,790
_1765
Position (kb)
1861
1862
1863 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1861.450 kb on - strand at 1861.465 kb on - strand at 1861.549 kb on - strand, within HP15_1763 at 1861.841 kb on - strand, within HP15_1763 at 1862.257 kb on - strand, within HP15_1764 at 1862.312 kb on - strand, within HP15_1764 at 1862.422 kb on - strand, within HP15_1764 at 1862.551 kb on - strand, within HP15_1764 at 1862.573 kb on + strand, within HP15_1764 at 1862.578 kb on + strand, within HP15_1764 at 1862.680 kb on - strand, within HP15_1764 at 1862.730 kb on + strand, within HP15_1764 at 1862.778 kb on + strand, within HP15_1764 at 1862.928 kb on - strand at 1863.175 kb on - strand at 1863.207 kb on - strand at 1863.256 kb on + strand at 1863.374 kb on - strand at 1863.427 kb on - strand at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.528 kb on + strand, within HP15_1765 at 1863.564 kb on - strand, within HP15_1765 at 1863.589 kb on + strand, within HP15_1765 at 1863.595 kb on + strand, within HP15_1765 at 1863.597 kb on - strand, within HP15_1765 at 1863.597 kb on - strand, within HP15_1765 at 1863.778 kb on + strand, within HP15_1765 at 1863.778 kb on + strand, within HP15_1765 at 1863.870 kb on - strand, within HP15_1765
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,861,450 - -0.6 1,861,465 - -1.0 1,861,549 - HP15_1763 0.14 -0.6 1,861,841 - HP15_1763 0.74 +0.6 1,862,257 - HP15_1764 0.29 +3.4 1,862,312 - HP15_1764 0.35 -0.6 1,862,422 - HP15_1764 0.46 -1.5 1,862,551 - HP15_1764 0.60 +0.4 1,862,573 + HP15_1764 0.63 -0.4 1,862,578 + HP15_1764 0.63 -0.2 1,862,680 - HP15_1764 0.74 -1.8 1,862,730 + HP15_1764 0.79 +1.6 1,862,778 + HP15_1764 0.84 +0.2 1,862,928 - +2.9 1,863,175 - +0.2 1,863,207 - -1.4 1,863,256 + +0.1 1,863,374 - -0.1 1,863,427 - +0.9 1,863,502 + HP15_1765 0.13 +0.1 1,863,502 + HP15_1765 0.13 -0.1 1,863,502 + HP15_1765 0.13 +1.1 1,863,502 + HP15_1765 0.13 -0.6 1,863,502 + HP15_1765 0.13 +1.5 1,863,502 + HP15_1765 0.13 -0.7 1,863,510 - HP15_1765 0.14 +0.2 1,863,510 - HP15_1765 0.14 +1.3 1,863,510 - HP15_1765 0.14 +0.3 1,863,528 + HP15_1765 0.15 -0.1 1,863,564 - HP15_1765 0.17 -0.0 1,863,589 + HP15_1765 0.19 +0.9 1,863,595 + HP15_1765 0.19 +0.6 1,863,597 - HP15_1765 0.20 -0.2 1,863,597 - HP15_1765 0.20 +0.9 1,863,778 + HP15_1765 0.32 +0.1 1,863,778 + HP15_1765 0.32 -0.1 1,863,870 - HP15_1765 0.38 +0.6
Or see this region's nucleotide sequence