Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_178 and HP15_177 overlap by 18 nucleotides HP15_177 and HP15_179 are separated by 104 nucleotides HP15_179 and HP15_180 overlap by 7 nucleotides
HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063
_178
HP15_177: HP15_177 - hypothetical protein, at 170,046 to 170,189
_177
HP15_179: HP15_179 - hypothetical protein, at 170,294 to 170,401
_179
HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747
_180
Position (kb) 170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.053 kb on + strand, within HP15_178 at 169.063 kb on + strand, within HP15_178 at 169.063 kb on + strand, within HP15_178 at 169.071 kb on - strand, within HP15_178 at 169.190 kb on + strand, within HP15_178 at 169.194 kb on + strand, within HP15_178 at 169.223 kb on - strand, within HP15_178 at 169.250 kb on - strand, within HP15_178 at 169.279 kb on + strand, within HP15_178 at 169.280 kb on + strand, within HP15_178 at 169.287 kb on - strand, within HP15_178 at 169.301 kb on + strand, within HP15_178 at 169.326 kb on - strand, within HP15_178 at 169.344 kb on - strand, within HP15_178 at 169.495 kb on + strand, within HP15_178 at 169.503 kb on - strand, within HP15_178 at 169.516 kb on - strand, within HP15_178 at 169.520 kb on + strand, within HP15_178 at 169.536 kb on - strand, within HP15_178 at 169.536 kb on - strand, within HP15_178 at 169.648 kb on - strand, within HP15_178 at 169.651 kb on + strand, within HP15_178 at 169.687 kb on + strand, within HP15_178 at 169.695 kb on - strand, within HP15_178 at 169.695 kb on - strand, within HP15_178 at 169.747 kb on + strand, within HP15_178 at 169.751 kb on + strand, within HP15_178 at 169.754 kb on - strand, within HP15_178 at 169.782 kb on + strand, within HP15_178 at 169.821 kb on - strand, within HP15_178 at 169.835 kb on + strand, within HP15_178 at 169.899 kb on + strand at 169.899 kb on + strand at 169.899 kb on + strand at 169.899 kb on + strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 170.037 kb on - strand at 170.138 kb on - strand, within HP15_177 at 170.159 kb on - strand, within HP15_177 at 170.231 kb on - strand at 170.246 kb on + strand at 170.592 kb on + strand, within HP15_180 at 170.600 kb on - strand, within HP15_180 at 170.644 kb on - strand, within HP15_180 at 170.653 kb on + strand, within HP15_180 at 170.708 kb on - strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.723 kb on + strand, within HP15_180 at 170.726 kb on - strand, within HP15_180 at 170.733 kb on - strand, within HP15_180 at 170.738 kb on + strand, within HP15_180 at 170.738 kb on + strand, within HP15_180 at 170.738 kb on - strand, within HP15_180 at 170.746 kb on - strand, within HP15_180 at 170.746 kb on - strand, within HP15_180 at 170.792 kb on - strand, within HP15_180 at 171.008 kb on + strand, within HP15_180 at 171.056 kb on + strand, within HP15_180 at 171.099 kb on - strand, within HP15_180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 169,053 + HP15_178 0.56 +0.2 169,063 + HP15_178 0.56 +0.3 169,063 + HP15_178 0.56 -0.3 169,071 - HP15_178 0.56 +2.7 169,190 + HP15_178 0.62 +0.5 169,194 + HP15_178 0.62 -0.3 169,223 - HP15_178 0.63 +0.2 169,250 - HP15_178 0.64 +0.4 169,279 + HP15_178 0.65 +0.6 169,280 + HP15_178 0.66 +2.1 169,287 - HP15_178 0.66 +0.8 169,301 + HP15_178 0.66 +0.3 169,326 - HP15_178 0.68 -0.3 169,344 - HP15_178 0.68 -0.1 169,495 + HP15_178 0.75 +0.1 169,503 - HP15_178 0.75 +0.1 169,516 - HP15_178 0.76 -0.5 169,520 + HP15_178 0.76 +0.6 169,536 - HP15_178 0.77 -0.6 169,536 - HP15_178 0.77 -0.2 169,648 - HP15_178 0.82 -0.2 169,651 + HP15_178 0.82 +0.7 169,687 + HP15_178 0.83 +0.8 169,695 - HP15_178 0.84 -0.4 169,695 - HP15_178 0.84 +0.3 169,747 + HP15_178 0.86 -0.1 169,751 + HP15_178 0.86 +0.0 169,754 - HP15_178 0.86 +0.9 169,782 + HP15_178 0.88 -0.7 169,821 - HP15_178 0.89 +0.6 169,835 + HP15_178 0.90 -0.7 169,899 + +1.0 169,899 + -0.4 169,899 + -1.7 169,899 + +1.1 169,907 - +0.1 169,907 - +0.9 169,907 - +0.3 169,907 - -1.2 169,907 - -0.4 169,907 - +0.2 170,037 - +0.1 170,138 - HP15_177 0.64 -0.6 170,159 - HP15_177 0.78 -0.3 170,231 - +0.0 170,246 + -0.3 170,592 + HP15_180 0.15 +0.0 170,600 - HP15_180 0.15 +1.0 170,644 - HP15_180 0.18 +0.1 170,653 + HP15_180 0.19 -0.9 170,708 - HP15_180 0.23 -0.6 170,718 + HP15_180 0.24 -0.6 170,718 + HP15_180 0.24 +0.4 170,718 + HP15_180 0.24 +0.5 170,723 + HP15_180 0.24 -0.2 170,726 - HP15_180 0.24 -0.8 170,733 - HP15_180 0.25 +0.5 170,738 + HP15_180 0.25 -0.4 170,738 + HP15_180 0.25 -0.9 170,738 - HP15_180 0.25 +0.9 170,746 - HP15_180 0.26 +0.8 170,746 - HP15_180 0.26 -1.2 170,792 - HP15_180 0.29 -0.0 171,008 + HP15_180 0.45 -0.2 171,056 + HP15_180 0.49 -0.7 171,099 - HP15_180 0.52 -3.0
Or see this region's nucleotide sequence