Strain Fitness in Marinobacter adhaerens HP15 around HP15_1670

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1669 and HP15_1670 are separated by 119 nucleotidesHP15_1670 and HP15_1671 are separated by 69 nucleotidesHP15_1671 and HP15_1672 are separated by 351 nucleotides HP15_1669: HP15_1669 - transcriptional regulator, LysR family protein, at 1,759,992 to 1,760,879 _1669 HP15_1670: HP15_1670 - conserved hypothetical protein, at 1,760,999 to 1,761,409 _1670 HP15_1671: HP15_1671 - secreted protein, at 1,761,479 to 1,761,598 _1671 HP15_1672: HP15_1672 - transcriptional regulator, AraC family protein, at 1,761,950 to 1,762,879 _1672 Position (kb) 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2at 1760.009 kb on + strandat 1760.009 kb on + strandat 1760.009 kb on + strandat 1760.017 kb on - strandat 1760.017 kb on - strandat 1760.041 kb on + strandat 1760.104 kb on - strand, within HP15_1669at 1760.246 kb on + strand, within HP15_1669at 1760.254 kb on - strand, within HP15_1669at 1760.258 kb on + strand, within HP15_1669at 1760.258 kb on + strand, within HP15_1669at 1760.266 kb on - strand, within HP15_1669at 1760.444 kb on - strand, within HP15_1669at 1760.451 kb on + strand, within HP15_1669at 1760.501 kb on - strand, within HP15_1669at 1760.574 kb on + strand, within HP15_1669at 1760.641 kb on + strand, within HP15_1669at 1760.649 kb on - strand, within HP15_1669at 1760.708 kb on - strand, within HP15_1669at 1760.710 kb on + strand, within HP15_1669at 1760.855 kb on + strandat 1760.863 kb on - strandat 1760.874 kb on + strandat 1760.933 kb on + strandat 1761.045 kb on - strand, within HP15_1670at 1761.078 kb on - strand, within HP15_1670at 1761.111 kb on + strand, within HP15_1670at 1761.112 kb on + strand, within HP15_1670at 1761.165 kb on + strand, within HP15_1670at 1761.165 kb on + strand, within HP15_1670at 1761.175 kb on + strand, within HP15_1670at 1761.175 kb on + strand, within HP15_1670at 1761.175 kb on + strand, within HP15_1670at 1761.175 kb on + strand, within HP15_1670at 1761.183 kb on - strand, within HP15_1670at 1761.183 kb on - strand, within HP15_1670at 1761.183 kb on - strand, within HP15_1670at 1761.234 kb on + strand, within HP15_1670at 1761.463 kb on + strandat 1761.642 kb on - strandat 1761.644 kb on - strandat 1761.784 kb on + strandat 1761.784 kb on + strandat 1761.796 kb on + strandat 1761.802 kb on - strandat 1762.014 kb on - strandat 1762.070 kb on - strand, within HP15_1672at 1762.167 kb on + strand, within HP15_1672at 1762.182 kb on + strand, within HP15_1672at 1762.182 kb on + strand, within HP15_1672at 1762.187 kb on + strand, within HP15_1672at 1762.187 kb on + strand, within HP15_1672at 1762.195 kb on - strand, within HP15_1672at 1762.195 kb on - strand, within HP15_1672at 1762.195 kb on - strand, within HP15_1672at 1762.212 kb on - strand, within HP15_1672

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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1,760,009 + -0.3
1,760,009 + +0.3
1,760,009 + -0.8
1,760,017 - -0.6
1,760,017 - -0.1
1,760,041 + +0.9
1,760,104 - HP15_1669 0.13 -0.1
1,760,246 + HP15_1669 0.29 +0.2
1,760,254 - HP15_1669 0.30 +0.1
1,760,258 + HP15_1669 0.30 +1.0
1,760,258 + HP15_1669 0.30 +0.3
1,760,266 - HP15_1669 0.31 -0.5
1,760,444 - HP15_1669 0.51 +0.2
1,760,451 + HP15_1669 0.52 -2.0
1,760,501 - HP15_1669 0.57 +0.1
1,760,574 + HP15_1669 0.66 -0.2
1,760,641 + HP15_1669 0.73 -0.1
1,760,649 - HP15_1669 0.74 -1.9
1,760,708 - HP15_1669 0.81 +1.7
1,760,710 + HP15_1669 0.81 -0.3
1,760,855 + -1.0
1,760,863 - -0.5
1,760,874 + +1.0
1,760,933 + -0.5
1,761,045 - HP15_1670 0.11 -0.4
1,761,078 - HP15_1670 0.19 -0.2
1,761,111 + HP15_1670 0.27 -0.1
1,761,112 + HP15_1670 0.27 +0.3
1,761,165 + HP15_1670 0.40 -0.7
1,761,165 + HP15_1670 0.40 +0.1
1,761,175 + HP15_1670 0.43 -1.8
1,761,175 + HP15_1670 0.43 -1.2
1,761,175 + HP15_1670 0.43 -0.7
1,761,175 + HP15_1670 0.43 -0.3
1,761,183 - HP15_1670 0.45 +0.0
1,761,183 - HP15_1670 0.45 -2.2
1,761,183 - HP15_1670 0.45 +0.6
1,761,234 + HP15_1670 0.57 -0.3
1,761,463 + +0.1
1,761,642 - +0.4
1,761,644 - -0.8
1,761,784 + -0.1
1,761,784 + +0.6
1,761,796 + -0.2
1,761,802 - -0.2
1,762,014 - -0.5
1,762,070 - HP15_1672 0.13 -1.3
1,762,167 + HP15_1672 0.23 +0.3
1,762,182 + HP15_1672 0.25 -0.4
1,762,182 + HP15_1672 0.25 +0.9
1,762,187 + HP15_1672 0.25 -0.5
1,762,187 + HP15_1672 0.25 +0.2
1,762,195 - HP15_1672 0.26 +0.1
1,762,195 - HP15_1672 0.26 +2.1
1,762,195 - HP15_1672 0.26 -0.2
1,762,212 - HP15_1672 0.28 -0.2

Or see this region's nucleotide sequence