Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1645 and HP15_1646 overlap by 14 nucleotides HP15_1646 and HP15_1647 are separated by 12 nucleotides HP15_1647 and HP15_1648 are separated by 51 nucleotides HP15_1648 and HP15_1649 are separated by 84 nucleotides
HP15_1645: HP15_1645 - UPF0276 protein containing DUF692, at 1,742,980 to 1,743,891
_1645
HP15_1646: HP15_1646 - conserved hypothetical protein, at 1,743,878 to 1,744,627
_1646
HP15_1647: HP15_1647 - DoxX, at 1,744,640 to 1,745,095
_1647
HP15_1648: HP15_1648 - protein containing thioredoxin domain, at 1,745,147 to 1,745,542
_1648
HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027
_1649
Position (kb)
1744
1745
1746 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1743.827 kb on - strand at 1743.834 kb on + strand at 1743.844 kb on + strand at 1743.856 kb on + strand at 1743.866 kb on - strand at 1743.875 kb on + strand at 1743.936 kb on + strand at 1743.959 kb on - strand, within HP15_1646 at 1744.131 kb on + strand, within HP15_1646 at 1744.139 kb on - strand, within HP15_1646 at 1744.192 kb on + strand, within HP15_1646 at 1744.222 kb on + strand, within HP15_1646 at 1744.325 kb on - strand, within HP15_1646 at 1744.364 kb on + strand, within HP15_1646 at 1744.380 kb on + strand, within HP15_1646 at 1744.388 kb on - strand, within HP15_1646 at 1744.413 kb on + strand, within HP15_1646 at 1744.829 kb on - strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.090 kb on + strand at 1745.090 kb on + strand at 1745.104 kb on + strand at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.297 kb on + strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.362 kb on + strand, within HP15_1648 at 1745.367 kb on + strand, within HP15_1648 at 1745.419 kb on - strand, within HP15_1648 at 1745.489 kb on + strand, within HP15_1648 at 1745.626 kb on - strand at 1745.626 kb on - strand at 1745.742 kb on + strand at 1745.888 kb on - strand, within HP15_1649 at 1745.890 kb on + strand, within HP15_1649 at 1746.001 kb on + strand, within HP15_1649
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,743,827 - +2.4 1,743,834 + +1.9 1,743,844 + -0.0 1,743,856 + -0.9 1,743,866 - -2.0 1,743,875 + -0.4 1,743,936 + -1.3 1,743,959 - HP15_1646 0.11 -0.5 1,744,131 + HP15_1646 0.34 -1.3 1,744,139 - HP15_1646 0.35 +0.5 1,744,192 + HP15_1646 0.42 -0.7 1,744,222 + HP15_1646 0.46 +0.5 1,744,325 - HP15_1646 0.60 +0.9 1,744,364 + HP15_1646 0.65 -0.9 1,744,380 + HP15_1646 0.67 -1.5 1,744,388 - HP15_1646 0.68 -0.9 1,744,413 + HP15_1646 0.71 +1.9 1,744,829 - HP15_1647 0.41 -0.1 1,745,040 + HP15_1647 0.88 -1.6 1,745,040 + HP15_1647 0.88 -0.5 1,745,090 + +0.1 1,745,090 + +2.5 1,745,104 + -2.5 1,745,292 + HP15_1648 0.37 -0.9 1,745,292 + HP15_1648 0.37 +0.4 1,745,292 + HP15_1648 0.37 +0.1 1,745,292 + HP15_1648 0.37 -1.0 1,745,292 + HP15_1648 0.37 +0.4 1,745,297 + HP15_1648 0.38 -0.9 1,745,300 - HP15_1648 0.39 -0.6 1,745,300 - HP15_1648 0.39 +0.7 1,745,362 + HP15_1648 0.54 +3.2 1,745,367 + HP15_1648 0.56 +1.5 1,745,419 - HP15_1648 0.69 -0.9 1,745,489 + HP15_1648 0.86 -1.4 1,745,626 - -0.8 1,745,626 - -1.3 1,745,742 + +0.7 1,745,888 - HP15_1649 0.19 -0.5 1,745,890 + HP15_1649 0.19 -1.1 1,746,001 + HP15_1649 0.27 -1.2
Or see this region's nucleotide sequence