Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_141 and HP15_142 are separated by 166 nucleotides HP15_142 and HP15_143 are separated by 41 nucleotides HP15_143 and HP15_144 are separated by 12 nucleotides HP15_144 and HP15_145 are separated by 3 nucleotides HP15_145 and HP15_146 are separated by 143 nucleotides
HP15_141: HP15_141 - transcriptional regulator, at 146,140 to 147,564
_141
HP15_142: HP15_142 - conserved hypothetical protein, membrane, at 147,731 to 148,288
_142
HP15_143: HP15_143 - hypothetical protein, at 148,330 to 148,533
_143
HP15_144: HP15_144 - conserved hypothetical protein, at 148,546 to 148,821
_144
HP15_145: HP15_145 - conserved hypothetical protein, membrane, at 148,825 to 149,127
_145
HP15_146: HP15_146 - hypothetical protein, at 149,271 to 149,468
_146
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 146.783 kb on + strand, within HP15_141 at 146.863 kb on + strand, within HP15_141 at 146.893 kb on - strand, within HP15_141 at 146.980 kb on - strand, within HP15_141 at 146.995 kb on + strand, within HP15_141 at 147.037 kb on - strand, within HP15_141 at 147.037 kb on - strand, within HP15_141 at 147.037 kb on - strand, within HP15_141 at 147.193 kb on - strand, within HP15_141 at 147.202 kb on + strand, within HP15_141 at 147.202 kb on + strand, within HP15_141 at 147.202 kb on + strand, within HP15_141 at 147.202 kb on + strand, within HP15_141 at 147.210 kb on - strand, within HP15_141 at 147.210 kb on - strand, within HP15_141 at 147.210 kb on - strand, within HP15_141 at 147.308 kb on - strand, within HP15_141 at 147.381 kb on + strand, within HP15_141 at 147.381 kb on + strand, within HP15_141 at 147.381 kb on + strand, within HP15_141 at 147.381 kb on + strand, within HP15_141 at 147.381 kb on + strand, within HP15_141 at 147.389 kb on - strand, within HP15_141 at 147.389 kb on - strand, within HP15_141 at 147.389 kb on - strand, within HP15_141 at 147.389 kb on - strand, within HP15_141 at 147.391 kb on + strand, within HP15_141 at 147.508 kb on - strand at 147.630 kb on - strand at 147.747 kb on + strand at 147.755 kb on - strand at 147.779 kb on + strand at 147.792 kb on - strand, within HP15_142 at 147.792 kb on - strand, within HP15_142 at 147.792 kb on - strand, within HP15_142 at 147.810 kb on - strand, within HP15_142 at 147.994 kb on - strand, within HP15_142 at 148.056 kb on + strand, within HP15_142 at 148.078 kb on - strand, within HP15_142 at 148.116 kb on - strand, within HP15_142 at 148.172 kb on + strand, within HP15_142 at 148.249 kb on + strand at 148.257 kb on - strand at 148.298 kb on - strand at 148.332 kb on + strand at 148.337 kb on + strand at 148.340 kb on - strand at 148.387 kb on - strand, within HP15_143 at 148.390 kb on - strand, within HP15_143 at 148.463 kb on - strand, within HP15_143 at 148.484 kb on - strand, within HP15_143 at 148.484 kb on - strand, within HP15_143 at 148.484 kb on - strand, within HP15_143 at 148.641 kb on + strand, within HP15_144 at 148.697 kb on + strand, within HP15_144 at 148.754 kb on - strand, within HP15_144 at 149.084 kb on + strand, within HP15_145 at 149.124 kb on - strand at 149.170 kb on + strand at 149.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 146,783 + HP15_141 0.45 +0.2 146,863 + HP15_141 0.51 -0.5 146,893 - HP15_141 0.53 +0.7 146,980 - HP15_141 0.59 -0.2 146,995 + HP15_141 0.60 -0.3 147,037 - HP15_141 0.63 -0.8 147,037 - HP15_141 0.63 +1.3 147,037 - HP15_141 0.63 +0.7 147,193 - HP15_141 0.74 +0.0 147,202 + HP15_141 0.75 -0.4 147,202 + HP15_141 0.75 +0.5 147,202 + HP15_141 0.75 +1.3 147,202 + HP15_141 0.75 +0.1 147,210 - HP15_141 0.75 +0.1 147,210 - HP15_141 0.75 +0.7 147,210 - HP15_141 0.75 +0.4 147,308 - HP15_141 0.82 +0.5 147,381 + HP15_141 0.87 -0.0 147,381 + HP15_141 0.87 -0.6 147,381 + HP15_141 0.87 -0.6 147,381 + HP15_141 0.87 -0.6 147,381 + HP15_141 0.87 +0.3 147,389 - HP15_141 0.88 +0.1 147,389 - HP15_141 0.88 +1.0 147,389 - HP15_141 0.88 +0.4 147,389 - HP15_141 0.88 +0.2 147,391 + HP15_141 0.88 -0.1 147,508 - +0.1 147,630 - +2.5 147,747 + +0.1 147,755 - +0.3 147,779 + -0.2 147,792 - HP15_142 0.11 -0.1 147,792 - HP15_142 0.11 -1.5 147,792 - HP15_142 0.11 -0.2 147,810 - HP15_142 0.14 -0.2 147,994 - HP15_142 0.47 -1.1 148,056 + HP15_142 0.58 -0.9 148,078 - HP15_142 0.62 +1.5 148,116 - HP15_142 0.69 -0.6 148,172 + HP15_142 0.79 +1.2 148,249 + +0.3 148,257 - -0.2 148,298 - +0.2 148,332 + +0.1 148,337 + -0.3 148,340 - -1.3 148,387 - HP15_143 0.28 +1.6 148,390 - HP15_143 0.29 +2.2 148,463 - HP15_143 0.65 +1.2 148,484 - HP15_143 0.75 +1.4 148,484 - HP15_143 0.75 +2.8 148,484 - HP15_143 0.75 -0.3 148,641 + HP15_144 0.34 +0.8 148,697 + HP15_144 0.55 +1.8 148,754 - HP15_144 0.75 +1.2 149,084 + HP15_145 0.85 +0.5 149,124 - -0.8 149,170 + -0.2 149,181 + -1.9
Or see this region's nucleotide sequence