Strain Fitness in Marinobacter adhaerens HP15 around HP15_140

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_138 and HP15_139 are separated by 93 nucleotidesHP15_139 and HP15_140 overlap by 1 nucleotidesHP15_140 and HP15_141 are separated by 844 nucleotides HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687 _138 HP15_139: HP15_139 - membrane protein, at 144,781 to 145,143 _139 HP15_140: HP15_140 - hypothetical protein, at 145,143 to 145,295 _140 HP15_141: HP15_141 - transcriptional regulator, at 146,140 to 147,564 _141 Position (kb) 145 146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 144.298 kb on + strand, within HP15_138at 144.298 kb on + strand, within HP15_138at 144.478 kb on + strand, within HP15_138at 144.501 kb on - strand, within HP15_138at 144.547 kb on - strand, within HP15_138at 144.547 kb on - strand, within HP15_138at 144.595 kb on + strandat 144.613 kb on - strandat 144.621 kb on + strandat 144.662 kb on - strandat 144.668 kb on + strandat 144.723 kb on - strandat 144.723 kb on - strandat 144.732 kb on - strandat 144.769 kb on - strandat 144.769 kb on - strandat 144.883 kb on + strand, within HP15_139at 144.888 kb on + strand, within HP15_139at 144.898 kb on + strand, within HP15_139at 144.904 kb on + strand, within HP15_139at 144.906 kb on - strand, within HP15_139at 144.944 kb on + strand, within HP15_139at 144.944 kb on + strand, within HP15_139at 144.952 kb on - strand, within HP15_139at 144.979 kb on - strand, within HP15_139at 145.029 kb on - strand, within HP15_139at 145.094 kb on + strand, within HP15_139at 145.153 kb on - strandat 145.153 kb on - strandat 145.193 kb on + strand, within HP15_140at 145.269 kb on + strand, within HP15_140at 145.355 kb on + strandat 145.363 kb on - strandat 145.506 kb on - strandat 145.547 kb on - strandat 145.575 kb on - strandat 145.637 kb on - strandat 145.684 kb on + strandat 145.684 kb on + strandat 145.719 kb on - strandat 145.771 kb on - strandat 145.929 kb on + strandat 145.942 kb on - strandat 146.000 kb on + strandat 146.113 kb on + strandat 146.130 kb on + strandat 146.138 kb on - strandat 146.210 kb on + strandat 146.230 kb on - strandat 146.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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144,298 + HP15_138 0.65 +0.0
144,298 + HP15_138 0.65 -0.6
144,478 + HP15_138 0.81 +0.3
144,501 - HP15_138 0.83 -0.0
144,547 - HP15_138 0.87 -0.8
144,547 - HP15_138 0.87 -0.8
144,595 + -1.2
144,613 - -0.1
144,621 + +0.8
144,662 - +0.3
144,668 + -0.4
144,723 - +0.0
144,723 - +0.9
144,732 - +0.2
144,769 - +0.8
144,769 - +0.2
144,883 + HP15_139 0.28 +0.2
144,888 + HP15_139 0.29 +3.0
144,898 + HP15_139 0.32 +0.7
144,904 + HP15_139 0.34 +1.2
144,906 - HP15_139 0.34 +0.5
144,944 + HP15_139 0.45 -0.7
144,944 + HP15_139 0.45 -0.2
144,952 - HP15_139 0.47 -1.8
144,979 - HP15_139 0.55 -1.6
145,029 - HP15_139 0.68 +0.5
145,094 + HP15_139 0.86 +0.2
145,153 - +0.7
145,153 - +0.4
145,193 + HP15_140 0.33 +0.1
145,269 + HP15_140 0.82 -1.0
145,355 + -0.3
145,363 - -1.0
145,506 - +1.0
145,547 - +0.3
145,575 - -0.8
145,637 - +0.2
145,684 + -0.2
145,684 + +0.3
145,719 - +0.4
145,771 - +0.7
145,929 + +0.4
145,942 - +0.2
146,000 + -0.1
146,113 + -0.1
146,130 + +0.0
146,138 - +0.5
146,210 + -0.3
146,230 - +0.6
146,230 - -0.8

Or see this region's nucleotide sequence