Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_138 and HP15_139 are separated by 93 nucleotides HP15_139 and HP15_140 overlap by 1 nucleotides HP15_140 and HP15_141 are separated by 844 nucleotides
HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687
_138
HP15_139: HP15_139 - membrane protein, at 144,781 to 145,143
_139
HP15_140: HP15_140 - hypothetical protein, at 145,143 to 145,295
_140
HP15_141: HP15_141 - transcriptional regulator, at 146,140 to 147,564
_141
Position (kb)
145
146 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 144.298 kb on + strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.478 kb on + strand, within HP15_138 at 144.501 kb on - strand, within HP15_138 at 144.547 kb on - strand, within HP15_138 at 144.547 kb on - strand, within HP15_138 at 144.595 kb on + strand at 144.613 kb on - strand at 144.621 kb on + strand at 144.662 kb on - strand at 144.668 kb on + strand at 144.723 kb on - strand at 144.723 kb on - strand at 144.732 kb on - strand at 144.769 kb on - strand at 144.769 kb on - strand at 144.883 kb on + strand, within HP15_139 at 144.888 kb on + strand, within HP15_139 at 144.898 kb on + strand, within HP15_139 at 144.904 kb on + strand, within HP15_139 at 144.906 kb on - strand, within HP15_139 at 144.944 kb on + strand, within HP15_139 at 144.944 kb on + strand, within HP15_139 at 144.952 kb on - strand, within HP15_139 at 144.979 kb on - strand, within HP15_139 at 145.029 kb on - strand, within HP15_139 at 145.094 kb on + strand, within HP15_139 at 145.153 kb on - strand at 145.153 kb on - strand at 145.193 kb on + strand, within HP15_140 at 145.269 kb on + strand, within HP15_140 at 145.355 kb on + strand at 145.363 kb on - strand at 145.506 kb on - strand at 145.547 kb on - strand at 145.575 kb on - strand at 145.637 kb on - strand at 145.684 kb on + strand at 145.684 kb on + strand at 145.719 kb on - strand at 145.771 kb on - strand at 145.929 kb on + strand at 145.942 kb on - strand at 146.000 kb on + strand at 146.113 kb on + strand at 146.130 kb on + strand at 146.138 kb on - strand at 146.210 kb on + strand at 146.230 kb on - strand at 146.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 144,298 + HP15_138 0.65 +0.0 144,298 + HP15_138 0.65 -0.6 144,478 + HP15_138 0.81 +0.3 144,501 - HP15_138 0.83 -0.0 144,547 - HP15_138 0.87 -0.8 144,547 - HP15_138 0.87 -0.8 144,595 + -1.2 144,613 - -0.1 144,621 + +0.8 144,662 - +0.3 144,668 + -0.4 144,723 - +0.0 144,723 - +0.9 144,732 - +0.2 144,769 - +0.8 144,769 - +0.2 144,883 + HP15_139 0.28 +0.2 144,888 + HP15_139 0.29 +3.0 144,898 + HP15_139 0.32 +0.7 144,904 + HP15_139 0.34 +1.2 144,906 - HP15_139 0.34 +0.5 144,944 + HP15_139 0.45 -0.7 144,944 + HP15_139 0.45 -0.2 144,952 - HP15_139 0.47 -1.8 144,979 - HP15_139 0.55 -1.6 145,029 - HP15_139 0.68 +0.5 145,094 + HP15_139 0.86 +0.2 145,153 - +0.7 145,153 - +0.4 145,193 + HP15_140 0.33 +0.1 145,269 + HP15_140 0.82 -1.0 145,355 + -0.3 145,363 - -1.0 145,506 - +1.0 145,547 - +0.3 145,575 - -0.8 145,637 - +0.2 145,684 + -0.2 145,684 + +0.3 145,719 - +0.4 145,771 - +0.7 145,929 + +0.4 145,942 - +0.2 146,000 + -0.1 146,113 + -0.1 146,130 + +0.0 146,138 - +0.5 146,210 + -0.3 146,230 - +0.6 146,230 - -0.8
Or see this region's nucleotide sequence