Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1195 and HP15_1196 are separated by 116 nucleotides HP15_1196 and HP15_1197 are separated by 36 nucleotides
HP15_1195: HP15_1195 - protein containing RecF/RecN/SMC protein, N-terminal domain, at 1,229,809 to 1,231,869
_1195
HP15_1196: HP15_1196 - membrane protein, at 1,231,986 to 1,232,336
_1196
HP15_1197: HP15_1197 - conserved hypothetical protein, at 1,232,373 to 1,233,335
_1197
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-1
0
1
2 at 1231.039 kb on + strand, within HP15_1195 at 1231.138 kb on - strand, within HP15_1195 at 1231.157 kb on - strand, within HP15_1195 at 1231.323 kb on - strand, within HP15_1195 at 1231.548 kb on - strand, within HP15_1195 at 1231.553 kb on - strand, within HP15_1195 at 1231.616 kb on + strand, within HP15_1195 at 1231.624 kb on - strand, within HP15_1195 at 1231.742 kb on - strand at 1231.818 kb on - strand at 1231.931 kb on + strand at 1232.163 kb on - strand, within HP15_1196 at 1232.198 kb on + strand, within HP15_1196 at 1232.251 kb on - strand, within HP15_1196 at 1232.257 kb on - strand, within HP15_1196 at 1232.315 kb on - strand at 1232.325 kb on - strand at 1232.413 kb on + strand at 1232.414 kb on - strand at 1232.415 kb on - strand at 1232.441 kb on + strand at 1232.443 kb on + strand at 1232.558 kb on - strand, within HP15_1197 at 1232.606 kb on - strand, within HP15_1197 at 1232.717 kb on - strand, within HP15_1197 at 1232.765 kb on + strand, within HP15_1197 at 1232.894 kb on - strand, within HP15_1197 at 1232.932 kb on - strand, within HP15_1197 at 1232.936 kb on + strand, within HP15_1197 at 1232.984 kb on - strand, within HP15_1197 at 1233.081 kb on - strand, within HP15_1197 at 1233.088 kb on - strand, within HP15_1197 at 1233.145 kb on - strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.225 kb on + strand, within HP15_1197 at 1233.312 kb on - strand at 1233.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,231,039 + HP15_1195 0.60 -0.7 1,231,138 - HP15_1195 0.64 +0.5 1,231,157 - HP15_1195 0.65 -0.2 1,231,323 - HP15_1195 0.73 +0.4 1,231,548 - HP15_1195 0.84 -1.2 1,231,553 - HP15_1195 0.85 +0.8 1,231,616 + HP15_1195 0.88 +1.4 1,231,624 - HP15_1195 0.88 +0.5 1,231,742 - +0.6 1,231,818 - -0.3 1,231,931 + +0.6 1,232,163 - HP15_1196 0.50 -0.8 1,232,198 + HP15_1196 0.60 +0.1 1,232,251 - HP15_1196 0.75 -0.6 1,232,257 - HP15_1196 0.77 -0.4 1,232,315 - +0.5 1,232,325 - +0.8 1,232,413 + +0.1 1,232,414 - -0.9 1,232,415 - -0.0 1,232,441 + -0.2 1,232,443 + +0.3 1,232,558 - HP15_1197 0.19 +0.1 1,232,606 - HP15_1197 0.24 +2.0 1,232,717 - HP15_1197 0.36 -0.1 1,232,765 + HP15_1197 0.41 +0.8 1,232,894 - HP15_1197 0.54 +0.8 1,232,932 - HP15_1197 0.58 -0.9 1,232,936 + HP15_1197 0.58 +0.4 1,232,984 - HP15_1197 0.63 +0.6 1,233,081 - HP15_1197 0.74 +1.1 1,233,088 - HP15_1197 0.74 +0.4 1,233,145 - HP15_1197 0.80 +1.9 1,233,186 + HP15_1197 0.84 +0.1 1,233,186 + HP15_1197 0.84 +0.8 1,233,225 + HP15_1197 0.88 +0.9 1,233,312 - -0.2 1,233,322 - +0.1
Or see this region's nucleotide sequence