Strain Fitness in Marinobacter adhaerens HP15 around HP15_1196

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1195 and HP15_1196 are separated by 116 nucleotidesHP15_1196 and HP15_1197 are separated by 36 nucleotides HP15_1195: HP15_1195 - protein containing RecF/RecN/SMC protein, N-terminal domain, at 1,229,809 to 1,231,869 _1195 HP15_1196: HP15_1196 - membrane protein, at 1,231,986 to 1,232,336 _1196 HP15_1197: HP15_1197 - conserved hypothetical protein, at 1,232,373 to 1,233,335 _1197 Position (kb) 1231 1232 1233Strain fitness (log2 ratio) -1 0 1 2at 1231.039 kb on + strand, within HP15_1195at 1231.138 kb on - strand, within HP15_1195at 1231.157 kb on - strand, within HP15_1195at 1231.323 kb on - strand, within HP15_1195at 1231.548 kb on - strand, within HP15_1195at 1231.553 kb on - strand, within HP15_1195at 1231.616 kb on + strand, within HP15_1195at 1231.624 kb on - strand, within HP15_1195at 1231.742 kb on - strandat 1231.818 kb on - strandat 1231.931 kb on + strandat 1232.163 kb on - strand, within HP15_1196at 1232.198 kb on + strand, within HP15_1196at 1232.251 kb on - strand, within HP15_1196at 1232.257 kb on - strand, within HP15_1196at 1232.315 kb on - strandat 1232.325 kb on - strandat 1232.413 kb on + strandat 1232.414 kb on - strandat 1232.415 kb on - strandat 1232.441 kb on + strandat 1232.443 kb on + strandat 1232.558 kb on - strand, within HP15_1197at 1232.606 kb on - strand, within HP15_1197at 1232.717 kb on - strand, within HP15_1197at 1232.765 kb on + strand, within HP15_1197at 1232.894 kb on - strand, within HP15_1197at 1232.932 kb on - strand, within HP15_1197at 1232.936 kb on + strand, within HP15_1197at 1232.984 kb on - strand, within HP15_1197at 1233.081 kb on - strand, within HP15_1197at 1233.088 kb on - strand, within HP15_1197at 1233.145 kb on - strand, within HP15_1197at 1233.186 kb on + strand, within HP15_1197at 1233.186 kb on + strand, within HP15_1197at 1233.225 kb on + strand, within HP15_1197at 1233.312 kb on - strandat 1233.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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1,231,039 + HP15_1195 0.60 -0.7
1,231,138 - HP15_1195 0.64 +0.5
1,231,157 - HP15_1195 0.65 -0.2
1,231,323 - HP15_1195 0.73 +0.4
1,231,548 - HP15_1195 0.84 -1.2
1,231,553 - HP15_1195 0.85 +0.8
1,231,616 + HP15_1195 0.88 +1.4
1,231,624 - HP15_1195 0.88 +0.5
1,231,742 - +0.6
1,231,818 - -0.3
1,231,931 + +0.6
1,232,163 - HP15_1196 0.50 -0.8
1,232,198 + HP15_1196 0.60 +0.1
1,232,251 - HP15_1196 0.75 -0.6
1,232,257 - HP15_1196 0.77 -0.4
1,232,315 - +0.5
1,232,325 - +0.8
1,232,413 + +0.1
1,232,414 - -0.9
1,232,415 - -0.0
1,232,441 + -0.2
1,232,443 + +0.3
1,232,558 - HP15_1197 0.19 +0.1
1,232,606 - HP15_1197 0.24 +2.0
1,232,717 - HP15_1197 0.36 -0.1
1,232,765 + HP15_1197 0.41 +0.8
1,232,894 - HP15_1197 0.54 +0.8
1,232,932 - HP15_1197 0.58 -0.9
1,232,936 + HP15_1197 0.58 +0.4
1,232,984 - HP15_1197 0.63 +0.6
1,233,081 - HP15_1197 0.74 +1.1
1,233,088 - HP15_1197 0.74 +0.4
1,233,145 - HP15_1197 0.80 +1.9
1,233,186 + HP15_1197 0.84 +0.1
1,233,186 + HP15_1197 0.84 +0.8
1,233,225 + HP15_1197 0.88 +0.9
1,233,312 - -0.2
1,233,322 - +0.1

Or see this region's nucleotide sequence