Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1190 and HP15_1191 are separated by 27 nucleotides HP15_1191 and HP15_1192 are separated by 36 nucleotides HP15_1192 and HP15_1193 are separated by 97 nucleotides
HP15_1190: HP15_1190 - methyl-accepting chemotaxis sensory transducer, at 1,224,081 to 1,225,706
_1190
HP15_1191: HP15_1191 - metallo-beta-lactamase family protein, at 1,225,734 to 1,226,381
_1191
HP15_1192: HP15_1192 - cytochrome c family protein, at 1,226,418 to 1,226,996
_1192
HP15_1193: HP15_1193 - conserved hypothetical protein, at 1,227,094 to 1,227,768
_1193
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1224.751 kb on + strand, within HP15_1190 at 1224.759 kb on - strand, within HP15_1190 at 1224.759 kb on - strand, within HP15_1190 at 1224.886 kb on - strand, within HP15_1190 at 1224.920 kb on - strand, within HP15_1190 at 1224.929 kb on - strand, within HP15_1190 at 1224.934 kb on + strand, within HP15_1190 at 1224.936 kb on - strand, within HP15_1190 at 1224.936 kb on - strand, within HP15_1190 at 1224.941 kb on - strand, within HP15_1190 at 1224.942 kb on - strand, within HP15_1190 at 1225.068 kb on + strand, within HP15_1190 at 1225.076 kb on - strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.335 kb on + strand, within HP15_1190 at 1225.450 kb on + strand, within HP15_1190 at 1225.466 kb on - strand, within HP15_1190 at 1225.473 kb on - strand, within HP15_1190 at 1225.587 kb on + strand at 1225.740 kb on - strand at 1225.740 kb on - strand at 1225.784 kb on + strand at 1225.865 kb on + strand, within HP15_1191 at 1225.990 kb on - strand, within HP15_1191 at 1225.990 kb on - strand, within HP15_1191 at 1225.992 kb on + strand, within HP15_1191 at 1226.174 kb on + strand, within HP15_1191 at 1226.249 kb on - strand, within HP15_1191 at 1226.317 kb on + strand at 1226.394 kb on - strand at 1226.500 kb on - strand, within HP15_1192 at 1226.502 kb on - strand, within HP15_1192 at 1226.623 kb on - strand, within HP15_1192 at 1226.641 kb on + strand, within HP15_1192 at 1226.726 kb on + strand, within HP15_1192 at 1226.812 kb on - strand, within HP15_1192 at 1226.931 kb on - strand, within HP15_1192 at 1227.012 kb on + strand at 1227.134 kb on + strand at 1227.150 kb on + strand at 1227.281 kb on + strand, within HP15_1193 at 1227.323 kb on - strand, within HP15_1193
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,224,751 + HP15_1190 0.41 -0.6 1,224,759 - HP15_1190 0.42 +0.2 1,224,759 - HP15_1190 0.42 +0.7 1,224,886 - HP15_1190 0.50 +0.6 1,224,920 - HP15_1190 0.52 -0.2 1,224,929 - HP15_1190 0.52 -0.2 1,224,934 + HP15_1190 0.52 +0.0 1,224,936 - HP15_1190 0.53 -0.3 1,224,936 - HP15_1190 0.53 +0.0 1,224,941 - HP15_1190 0.53 -0.0 1,224,942 - HP15_1190 0.53 +0.6 1,225,068 + HP15_1190 0.61 +2.0 1,225,076 - HP15_1190 0.61 -0.1 1,225,122 + HP15_1190 0.64 -2.2 1,225,122 + HP15_1190 0.64 +1.9 1,225,122 + HP15_1190 0.64 +0.5 1,225,335 + HP15_1190 0.77 +1.5 1,225,450 + HP15_1190 0.84 +0.3 1,225,466 - HP15_1190 0.85 +1.1 1,225,473 - HP15_1190 0.86 +0.2 1,225,587 + +0.1 1,225,740 - -0.0 1,225,740 - -2.7 1,225,784 + -0.1 1,225,865 + HP15_1191 0.20 -0.2 1,225,990 - HP15_1191 0.40 -1.5 1,225,990 - HP15_1191 0.40 +0.4 1,225,992 + HP15_1191 0.40 -0.2 1,226,174 + HP15_1191 0.68 +0.2 1,226,249 - HP15_1191 0.79 -0.2 1,226,317 + -2.0 1,226,394 - -0.8 1,226,500 - HP15_1192 0.14 +0.2 1,226,502 - HP15_1192 0.15 -0.5 1,226,623 - HP15_1192 0.35 -1.4 1,226,641 + HP15_1192 0.39 +0.8 1,226,726 + HP15_1192 0.53 +1.0 1,226,812 - HP15_1192 0.68 -1.2 1,226,931 - HP15_1192 0.89 -1.0 1,227,012 + +0.3 1,227,134 + +0.2 1,227,150 + +0.2 1,227,281 + HP15_1193 0.28 +0.8 1,227,323 - HP15_1193 0.34 -0.9
Or see this region's nucleotide sequence