Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_119 and HP15_120 are separated by 124 nucleotides HP15_120 and HP15_121 are separated by 287 nucleotides HP15_121 and HP15_122 overlap by 30 nucleotides
HP15_119: HP15_119 - conserved hypothetical protein, at 128,681 to 129,274
_119
HP15_120: HP15_120 - DNA-binding heavy metal response regulator, at 129,399 to 130,085
_120
HP15_121: HP15_121 - transposase, OrfA, at 130,373 to 130,678
_121
HP15_122: HP15_122 - transposase, IS30 family, at 130,649 to 131,818
_122
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 128.583 kb on + strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.595 kb on + strand at 128.610 kb on - strand at 128.687 kb on - strand at 128.705 kb on - strand at 128.721 kb on - strand at 128.786 kb on + strand, within HP15_119 at 128.806 kb on + strand, within HP15_119 at 128.816 kb on + strand, within HP15_119 at 128.816 kb on + strand, within HP15_119 at 128.824 kb on - strand, within HP15_119 at 128.910 kb on + strand, within HP15_119 at 128.931 kb on + strand, within HP15_119 at 128.953 kb on - strand, within HP15_119 at 128.987 kb on - strand, within HP15_119 at 128.987 kb on - strand, within HP15_119 at 129.187 kb on - strand, within HP15_119 at 129.253 kb on + strand at 129.345 kb on + strand at 129.355 kb on + strand at 129.355 kb on + strand at 129.363 kb on - strand at 129.438 kb on + strand at 129.543 kb on + strand, within HP15_120 at 129.629 kb on + strand, within HP15_120 at 129.659 kb on + strand, within HP15_120 at 129.675 kb on - strand, within HP15_120 at 129.824 kb on - strand, within HP15_120 at 129.865 kb on + strand, within HP15_120 at 129.926 kb on + strand, within HP15_120 at 129.934 kb on - strand, within HP15_120 at 129.934 kb on - strand, within HP15_120 at 130.079 kb on - strand at 130.126 kb on + strand at 130.136 kb on - strand at 130.275 kb on - strand at 130.305 kb on + strand at 130.313 kb on - strand at 130.358 kb on + strand at 130.366 kb on + strand at 130.377 kb on + strand at 130.433 kb on - strand, within HP15_121 at 130.441 kb on + strand, within HP15_121 at 130.441 kb on + strand, within HP15_121 at 130.506 kb on - strand, within HP15_121 at 130.511 kb on - strand, within HP15_121 at 130.554 kb on + strand, within HP15_121 at 130.560 kb on + strand, within HP15_121 at 130.560 kb on + strand, within HP15_121 at 130.568 kb on - strand, within HP15_121 at 130.605 kb on + strand, within HP15_121 at 130.615 kb on + strand, within HP15_121 at 130.624 kb on - strand, within HP15_121 at 130.690 kb on + strand at 130.697 kb on - strand at 130.697 kb on - strand at 130.698 kb on - strand at 130.807 kb on + strand, within HP15_122 at 130.936 kb on - strand, within HP15_122 at 130.938 kb on + strand, within HP15_122 at 130.946 kb on - strand, within HP15_122 at 130.948 kb on - strand, within HP15_122 at 130.966 kb on + strand, within HP15_122 at 130.966 kb on + strand, within HP15_122 at 131.026 kb on + strand, within HP15_122 at 131.026 kb on + strand, within HP15_122 at 131.034 kb on - strand, within HP15_122
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 128,583 + -0.1 128,591 - +0.8 128,591 - +0.6 128,591 - +0.6 128,591 - -1.5 128,595 + -1.7 128,610 - -1.0 128,687 - +0.4 128,705 - +0.6 128,721 - +0.2 128,786 + HP15_119 0.18 -1.1 128,806 + HP15_119 0.21 +0.0 128,816 + HP15_119 0.23 +1.6 128,816 + HP15_119 0.23 -0.1 128,824 - HP15_119 0.24 +0.9 128,910 + HP15_119 0.39 -0.0 128,931 + HP15_119 0.42 +2.4 128,953 - HP15_119 0.46 +1.4 128,987 - HP15_119 0.52 +0.1 128,987 - HP15_119 0.52 +0.3 129,187 - HP15_119 0.85 -1.8 129,253 + -0.3 129,345 + -0.2 129,355 + +0.0 129,355 + -0.2 129,363 - +0.6 129,438 + -0.3 129,543 + HP15_120 0.21 +0.1 129,629 + HP15_120 0.33 -0.5 129,659 + HP15_120 0.38 -0.4 129,675 - HP15_120 0.40 +0.2 129,824 - HP15_120 0.62 -0.6 129,865 + HP15_120 0.68 -0.2 129,926 + HP15_120 0.77 -0.4 129,934 - HP15_120 0.78 -0.4 129,934 - HP15_120 0.78 -0.9 130,079 - +0.6 130,126 + -0.0 130,136 - -0.2 130,275 - -0.7 130,305 + -0.5 130,313 - +0.4 130,358 + -0.1 130,366 + +0.0 130,377 + +0.1 130,433 - HP15_121 0.20 -1.3 130,441 + HP15_121 0.22 +0.4 130,441 + HP15_121 0.22 -0.8 130,506 - HP15_121 0.43 -0.0 130,511 - HP15_121 0.45 +1.5 130,554 + HP15_121 0.59 +1.0 130,560 + HP15_121 0.61 -0.2 130,560 + HP15_121 0.61 +0.2 130,568 - HP15_121 0.64 +0.3 130,605 + HP15_121 0.76 +0.5 130,615 + HP15_121 0.79 +0.0 130,624 - HP15_121 0.82 +0.1 130,690 + +1.4 130,697 - +0.0 130,697 - +1.6 130,698 - +1.5 130,807 + HP15_122 0.14 +3.2 130,936 - HP15_122 0.25 -0.0 130,938 + HP15_122 0.25 +0.8 130,946 - HP15_122 0.25 +0.2 130,948 - HP15_122 0.26 +0.3 130,966 + HP15_122 0.27 -1.0 130,966 + HP15_122 0.27 +2.4 131,026 + HP15_122 0.32 -0.6 131,026 + HP15_122 0.32 +0.4 131,034 - HP15_122 0.33 +0.1
Or see this region's nucleotide sequence