Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1155 and HP15_1156 overlap by 29 nucleotides HP15_1156 and HP15_1157 are separated by 43 nucleotides HP15_1157 and HP15_1158 are separated by 157 nucleotides
HP15_1155: HP15_1155 - conserved hypothetical protein, at 1,188,639 to 1,190,063
_1155
HP15_1156: HP15_1156 - conserved hypothetical protein, at 1,190,035 to 1,190,409
_1156
HP15_1157: HP15_1157 - cold-shock DNA-binding domain protein, at 1,190,453 to 1,191,052
_1157
HP15_1158: HP15_1158 - SlyX protein, at 1,191,210 to 1,191,428
_1158
Position (kb)
1190
1191 Strain fitness (log2 ratio)
-1
0
1
2 at 1189.114 kb on + strand, within HP15_1155 at 1189.204 kb on - strand, within HP15_1155 at 1189.257 kb on + strand, within HP15_1155 at 1189.299 kb on + strand, within HP15_1155 at 1189.327 kb on + strand, within HP15_1155 at 1189.367 kb on + strand, within HP15_1155 at 1189.388 kb on - strand, within HP15_1155 at 1189.458 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155 at 1189.746 kb on + strand, within HP15_1155 at 1189.754 kb on - strand, within HP15_1155 at 1189.776 kb on - strand, within HP15_1155 at 1189.866 kb on - strand, within HP15_1155 at 1190.271 kb on - strand, within HP15_1156 at 1190.271 kb on - strand, within HP15_1156 at 1190.318 kb on + strand, within HP15_1156 at 1190.376 kb on + strand at 1190.530 kb on - strand, within HP15_1157 at 1190.578 kb on - strand, within HP15_1157 at 1190.745 kb on - strand, within HP15_1157 at 1190.815 kb on + strand, within HP15_1157 at 1190.815 kb on + strand, within HP15_1157 at 1190.822 kb on + strand, within HP15_1157 at 1190.869 kb on + strand, within HP15_1157 at 1190.932 kb on - strand, within HP15_1157 at 1191.124 kb on - strand at 1191.144 kb on - strand at 1191.187 kb on + strand at 1191.195 kb on - strand at 1191.288 kb on - strand, within HP15_1158 at 1191.396 kb on + strand, within HP15_1158 at 1191.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,189,114 + HP15_1155 0.33 -0.6 1,189,204 - HP15_1155 0.40 -0.1 1,189,257 + HP15_1155 0.43 +0.2 1,189,299 + HP15_1155 0.46 +0.4 1,189,327 + HP15_1155 0.48 +0.4 1,189,367 + HP15_1155 0.51 -0.4 1,189,388 - HP15_1155 0.53 -1.5 1,189,458 - HP15_1155 0.57 +2.1 1,189,476 - HP15_1155 0.59 -0.6 1,189,476 - HP15_1155 0.59 -0.5 1,189,746 + HP15_1155 0.78 +2.1 1,189,754 - HP15_1155 0.78 -0.3 1,189,776 - HP15_1155 0.80 -0.6 1,189,866 - HP15_1155 0.86 +0.2 1,190,271 - HP15_1156 0.63 -0.5 1,190,271 - HP15_1156 0.63 -0.0 1,190,318 + HP15_1156 0.75 -0.6 1,190,376 + +0.1 1,190,530 - HP15_1157 0.13 -0.5 1,190,578 - HP15_1157 0.21 +2.4 1,190,745 - HP15_1157 0.49 +0.3 1,190,815 + HP15_1157 0.60 +0.2 1,190,815 + HP15_1157 0.60 -1.2 1,190,822 + HP15_1157 0.61 +1.4 1,190,869 + HP15_1157 0.69 -0.7 1,190,932 - HP15_1157 0.80 -0.9 1,191,124 - +0.3 1,191,144 - +0.6 1,191,187 + -1.2 1,191,195 - -0.2 1,191,288 - HP15_1158 0.36 +0.2 1,191,396 + HP15_1158 0.85 +0.3 1,191,409 - -0.3
Or see this region's nucleotide sequence