Strain Fitness in Marinobacter adhaerens HP15 around HP15_117

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_116 and HP15_117 are separated by 302 nucleotidesHP15_117 and HP15_118 are separated by 59 nucleotidesHP15_118 and HP15_119 are separated by 488 nucleotides HP15_116: HP15_116 - two-component sensor, at 126,110 to 127,477 _116 HP15_117: HP15_117 - conserved hypothetical protein, secreted, at 127,780 to 128,010 _117 HP15_118: HP15_118 - hypothetical protein, at 128,070 to 128,192 _118 HP15_119: HP15_119 - conserved hypothetical protein, at 128,681 to 129,274 _119 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1 2 3at 126.798 kb on + strand, within HP15_116at 126.824 kb on + strand, within HP15_116at 126.855 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.914 kb on + strand, within HP15_116at 126.920 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.975 kb on + strand, within HP15_116at 126.975 kb on + strand, within HP15_116at 127.226 kb on + strand, within HP15_116at 127.286 kb on - strand, within HP15_116at 127.288 kb on - strand, within HP15_116at 127.335 kb on + strand, within HP15_116at 127.428 kb on + strandat 127.428 kb on + strandat 127.428 kb on + strandat 127.432 kb on + strandat 127.467 kb on + strandat 127.468 kb on - strandat 127.475 kb on - strandat 127.476 kb on + strandat 127.489 kb on - strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.560 kb on - strandat 127.560 kb on - strandat 127.564 kb on + strandat 127.574 kb on + strandat 127.577 kb on - strandat 127.577 kb on - strandat 127.619 kb on + strandat 127.619 kb on + strandat 127.654 kb on - strandat 127.711 kb on + strandat 127.870 kb on - strand, within HP15_117at 127.870 kb on - strand, within HP15_117at 127.908 kb on - strand, within HP15_117at 127.932 kb on + strand, within HP15_117at 127.932 kb on + strand, within HP15_117at 128.121 kb on - strand, within HP15_118at 128.332 kb on - strandat 128.583 kb on + strandat 128.591 kb on - strandat 128.591 kb on - strandat 128.591 kb on - strandat 128.591 kb on - strandat 128.595 kb on + strandat 128.610 kb on - strandat 128.687 kb on - strandat 128.705 kb on - strandat 128.721 kb on - strandat 128.786 kb on + strand, within HP15_119at 128.806 kb on + strand, within HP15_119at 128.816 kb on + strand, within HP15_119at 128.816 kb on + strand, within HP15_119at 128.824 kb on - strand, within HP15_119at 128.910 kb on + strand, within HP15_119at 128.931 kb on + strand, within HP15_119at 128.953 kb on - strand, within HP15_119at 128.987 kb on - strand, within HP15_119at 128.987 kb on - strand, within HP15_119

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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126,798 + HP15_116 0.50 +0.0
126,824 + HP15_116 0.52 +0.2
126,855 + HP15_116 0.54 -0.4
126,867 + HP15_116 0.55 +0.0
126,867 + HP15_116 0.55 -1.4
126,914 + HP15_116 0.59 +0.8
126,920 + HP15_116 0.59 -0.3
126,962 + HP15_116 0.62 -0.0
126,962 + HP15_116 0.62 +1.7
126,962 + HP15_116 0.62 +0.7
126,970 - HP15_116 0.63 -0.4
126,970 - HP15_116 0.63 -0.4
126,970 - HP15_116 0.63 -1.0
126,975 + HP15_116 0.63 +1.7
126,975 + HP15_116 0.63 +0.5
127,226 + HP15_116 0.82 -0.5
127,286 - HP15_116 0.86 -0.2
127,288 - HP15_116 0.86 -0.1
127,335 + HP15_116 0.90 -0.4
127,428 + +1.3
127,428 + -0.8
127,428 + -0.0
127,432 + +3.2
127,467 + -0.5
127,468 - +0.6
127,475 - +1.0
127,476 + -1.4
127,489 - +0.5
127,552 + -0.4
127,552 + +0.8
127,552 + -0.3
127,552 + -0.4
127,560 - +0.1
127,560 - -0.1
127,564 + +0.2
127,574 + +0.3
127,577 - -1.0
127,577 - +0.2
127,619 + -0.1
127,619 + -0.8
127,654 - -0.3
127,711 + -0.5
127,870 - HP15_117 0.39 +0.4
127,870 - HP15_117 0.39 -0.7
127,908 - HP15_117 0.55 -1.0
127,932 + HP15_117 0.66 -0.6
127,932 + HP15_117 0.66 -0.0
128,121 - HP15_118 0.41 +0.8
128,332 - +2.1
128,583 + -0.1
128,591 - +0.8
128,591 - +0.6
128,591 - +0.6
128,591 - -1.5
128,595 + -1.7
128,610 - -1.0
128,687 - +0.4
128,705 - +0.6
128,721 - +0.2
128,786 + HP15_119 0.18 -1.1
128,806 + HP15_119 0.21 +0.0
128,816 + HP15_119 0.23 +1.6
128,816 + HP15_119 0.23 -0.1
128,824 - HP15_119 0.24 +0.9
128,910 + HP15_119 0.39 -0.0
128,931 + HP15_119 0.42 +2.4
128,953 - HP15_119 0.46 +1.4
128,987 - HP15_119 0.52 +0.1
128,987 - HP15_119 0.52 +0.3

Or see this region's nucleotide sequence