Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1052 and HP15_1053 are separated by 39 nucleotides HP15_1053 and HP15_1054 are separated by 45 nucleotides HP15_1054 and HP15_1055 overlap by 4 nucleotides
HP15_1052: HP15_1052 - peptidase S16, lon domain-containing protein, at 1,072,406 to 1,074,813
_1052
HP15_1053: HP15_1053 - two component transcriptional regulator, LuxR family, at 1,074,853 to 1,075,479
_1053
HP15_1054: HP15_1054 - multi-sensor signal transduction histidine kinase, at 1,075,525 to 1,077,102
_1054
HP15_1055: HP15_1055 - MaoC domain protein, at 1,077,099 to 1,077,925
_1055
Position (kb)
1075
1076
1077
1078 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1074.530 kb on - strand, within HP15_1052 at 1074.685 kb on + strand at 1074.704 kb on + strand at 1074.709 kb on + strand at 1074.838 kb on + strand at 1075.223 kb on + strand, within HP15_1053 at 1075.231 kb on - strand, within HP15_1053 at 1075.249 kb on - strand, within HP15_1053 at 1075.387 kb on - strand, within HP15_1053 at 1075.452 kb on - strand at 1075.659 kb on + strand at 1075.730 kb on + strand, within HP15_1054 at 1075.738 kb on - strand, within HP15_1054 at 1075.757 kb on - strand, within HP15_1054 at 1076.071 kb on + strand, within HP15_1054 at 1076.204 kb on + strand, within HP15_1054 at 1076.503 kb on - strand, within HP15_1054 at 1077.043 kb on + strand at 1077.105 kb on - strand at 1077.152 kb on + strand at 1077.165 kb on - strand at 1077.364 kb on - strand, within HP15_1055 at 1077.371 kb on - strand, within HP15_1055 at 1077.661 kb on + strand, within HP15_1055 at 1077.713 kb on - strand, within HP15_1055 at 1077.795 kb on + strand, within HP15_1055 at 1077.821 kb on - strand, within HP15_1055 at 1077.984 kb on - strand at 1078.085 kb on - strand at 1078.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 1,074,530 - HP15_1052 0.88 -1.2 1,074,685 + -1.0 1,074,704 + -0.1 1,074,709 + +1.1 1,074,838 + -0.4 1,075,223 + HP15_1053 0.59 -1.9 1,075,231 - HP15_1053 0.60 -1.8 1,075,249 - HP15_1053 0.63 -3.0 1,075,387 - HP15_1053 0.85 -1.8 1,075,452 - +0.3 1,075,659 + -4.1 1,075,730 + HP15_1054 0.13 -0.8 1,075,738 - HP15_1054 0.13 +1.4 1,075,757 - HP15_1054 0.15 -3.0 1,076,071 + HP15_1054 0.35 -1.2 1,076,204 + HP15_1054 0.43 -2.0 1,076,503 - HP15_1054 0.62 +0.2 1,077,043 + -1.0 1,077,105 - +1.7 1,077,152 + -0.5 1,077,165 - +0.6 1,077,364 - HP15_1055 0.32 -0.8 1,077,371 - HP15_1055 0.33 +0.9 1,077,661 + HP15_1055 0.68 -0.7 1,077,713 - HP15_1055 0.74 -0.5 1,077,795 + HP15_1055 0.84 +0.6 1,077,821 - HP15_1055 0.87 -0.8 1,077,984 - +0.3 1,078,085 - -0.6 1,078,087 + +0.2
Or see this region's nucleotide sequence