Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_979 and HP15_980 are separated by 256 nucleotides HP15_980 and HP15_981 overlap by 73 nucleotides HP15_981 and HP15_982 are separated by 140 nucleotides
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023
_980
HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163
_981
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1
2 at 989.000 kb on - strand, within HP15_979 at 989.021 kb on + strand, within HP15_979 at 989.260 kb on + strand, within HP15_979 at 989.303 kb on + strand at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand at 989.553 kb on - strand at 989.580 kb on - strand at 989.649 kb on - strand at 989.663 kb on + strand at 989.830 kb on - strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.929 kb on + strand, within HP15_980 at 989.959 kb on + strand at 990.009 kb on - strand at 990.018 kb on + strand at 990.097 kb on + strand, within HP15_981 at 990.097 kb on + strand, within HP15_981 at 990.105 kb on - strand, within HP15_981 at 990.211 kb on + strand at 990.229 kb on - strand at 990.229 kb on - strand at 990.399 kb on - strand at 990.458 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.488 kb on - strand at 990.501 kb on - strand at 990.626 kb on - strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.734 kb on - strand, within HP15_982 at 990.815 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 991.047 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.111 kb on - strand, within HP15_982 at 991.119 kb on + strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.154 kb on - strand, within HP15_982
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 989,000 - HP15_979 0.52 +1.2 989,021 + HP15_979 0.55 +0.2 989,260 + HP15_979 0.85 +0.2 989,303 + +0.7 989,389 - +0.4 989,399 - -0.1 989,415 + +1.1 989,553 - -0.2 989,580 - +0.0 989,649 - -0.1 989,663 + +1.7 989,830 - HP15_980 0.50 -0.1 989,852 + HP15_980 0.56 +0.4 989,852 + HP15_980 0.56 -0.7 989,860 - HP15_980 0.58 +0.4 989,860 - HP15_980 0.58 +0.1 989,929 + HP15_980 0.75 +0.4 989,959 + -0.0 990,009 - +0.1 990,018 + -0.9 990,097 + HP15_981 0.69 -0.1 990,097 + HP15_981 0.69 -0.5 990,105 - HP15_981 0.72 -1.0 990,211 + -0.0 990,229 - -0.8 990,229 - +1.0 990,399 - -0.2 990,458 - +0.3 990,474 - +0.7 990,474 - +1.8 990,474 - -0.1 990,488 - -0.6 990,501 - -0.4 990,626 - HP15_982 0.11 +0.7 990,726 + HP15_982 0.14 +0.3 990,726 + HP15_982 0.14 +1.2 990,734 - HP15_982 0.14 +1.8 990,815 + HP15_982 0.17 -0.9 990,829 + HP15_982 0.18 +0.1 990,829 + HP15_982 0.18 +1.6 990,864 + HP15_982 0.19 -0.1 990,864 + HP15_982 0.19 +0.5 991,047 - HP15_982 0.25 -1.2 991,054 - HP15_982 0.25 +0.6 991,054 - HP15_982 0.25 -0.3 991,111 - HP15_982 0.27 +0.8 991,119 + HP15_982 0.27 -0.2 991,140 - HP15_982 0.28 +0.0 991,140 - HP15_982 0.28 -0.0 991,154 - HP15_982 0.29 +2.1
Or see this region's nucleotide sequence