Strain Fitness in Shewanella oneidensis MR-1 around SO2753.2

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_2754 and SO2753.2 overlap by 14 nucleotidesSO2753.2 and rnt are separated by 193 nucleotidesrnt and SO_2756 are separated by 71 nucleotides SO_2754: SO_2754 - no description, at 2,876,109 to 2,876,573 _2754 SO2753.2: SO2753.2 - hypothetical sodium-type flagellar protein MotY (NCBI ptt file), at 2,876,560 to 2,876,928 SO2753.2 SO2755: rnt - ribonuclease T (NCBI ptt file), at 2,877,122 to 2,877,790 rnt SO_2756: SO_2756 - no description, at 2,877,862 to 2,878,467 _2756 Position (kb) 2876 2877Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2875.730 kb on - strandat 2876.008 kb on + strandat 2876.140 kb on - strandat 2876.337 kb on - strand, within SO_2754at 2876.411 kb on - strand, within SO_2754at 2876.430 kb on + strand, within SO_2754at 2876.460 kb on + strand, within SO_2754at 2876.555 kb on + strandat 2876.586 kb on + strandat 2876.630 kb on + strand, within SO2753.2at 2876.725 kb on - strand, within SO2753.2at 2876.758 kb on - strand, within SO2753.2at 2876.814 kb on - strand, within SO2753.2at 2876.817 kb on + strand, within SO2753.2at 2876.874 kb on - strand, within SO2753.2at 2877.072 kb on - strandat 2877.754 kb on - strandat 2877.778 kb on - strandat 2877.778 kb on - strandat 2877.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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2,875,730 - -0.6
2,876,008 + -1.1
2,876,140 - +2.4
2,876,337 - SO_2754 0.49 +3.5
2,876,411 - SO_2754 0.65 +3.3
2,876,430 + SO_2754 0.69 +3.5
2,876,460 + SO_2754 0.75 +3.2
2,876,555 + +3.0
2,876,586 + +6.1
2,876,630 + SO2753.2 0.19 +2.9
2,876,725 - SO2753.2 0.45 +2.7
2,876,758 - SO2753.2 0.54 +2.5
2,876,814 - SO2753.2 0.69 +3.0
2,876,817 + SO2753.2 0.70 +2.6
2,876,874 - SO2753.2 0.85 +2.5
2,877,072 - +0.8
2,877,754 - +2.7
2,877,778 - +0.5
2,877,778 - +0.8
2,877,908 - -0.0

Or see this region's nucleotide sequence