Strain Fitness in Shewanella oneidensis MR-1 around SOA0168

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0167 and SOA0168 are separated by 163 nucleotidesSOA0168 and SOA0169 overlap by 4 nucleotidesSOA0169 and SOA0170 overlap by 7 nucleotides SOA0167: SOA0167 - ISSod9, transposase (NCBI ptt file), at 155,302 to 158,268 SOA0167 SOA0168: SOA0168 - ISSo9, nucleotidyltransferase domain protein (NCBI ptt file), at 158,432 to 158,722 SOA0168 SOA0169: SOA0169 - ISSod9, conserved hypothetical protein (NCBI ptt file), at 158,719 to 159,096 SOA0169 SOA0170: SOA0170 - ISSod9, DNA-invertase (NCBI ptt file), at 159,090 to 159,647 SOA0170 Position (kb) 158 159Strain fitness (log2 ratio) -1 0 1 2at 159.687 kb on + strandat 159.699 kb on + strandat 159.700 kb on - strandat 159.700 kb on - strandat 159.709 kb on + strandat 159.709 kb on + strandat 159.709 kb on + strandat 159.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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159,687 + +2.5
159,699 + +1.7
159,700 - +1.7
159,700 - +2.4
159,709 + +1.9
159,709 + +1.5
159,709 + +2.3
159,709 + +1.3

Or see this region's nucleotide sequence