Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0165 and SO_A0166 are separated by 63 nucleotides SO_A0166 and SOA0167 are separated by 33 nucleotides SOA0167 and SOA0168 are separated by 163 nucleotides SOA0168 and SOA0169 overlap by 4 nucleotides SOA0169 and SOA0170 overlap by 7 nucleotides
SOA0165: SOA0165 - transcriptional regulator, LysR family (NCBI ptt file), at 154,093 to 154,962
SOA0165
SO_A0166: SO_A0166 - no description, at 155,026 to 155,268
_A0166
SOA0167: SOA0167 - ISSod9, transposase (NCBI ptt file), at 155,302 to 158,268
SOA0167
SOA0168: SOA0168 - ISSo9, nucleotidyltransferase domain protein (NCBI ptt file), at 158,432 to 158,722
SOA0168
SOA0169: SOA0169 - ISSod9, conserved hypothetical protein (NCBI ptt file), at 158,719 to 159,096
SOA0169
SOA0170: SOA0170 - ISSod9, DNA-invertase (NCBI ptt file), at 159,090 to 159,647
SOA0170
Position (kb) 155
156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.304 kb on - strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.316 kb on + strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.324 kb on - strand, within SOA0165 at 154.345 kb on + strand, within SOA0165 at 154.357 kb on + strand, within SOA0165 at 154.445 kb on + strand, within SOA0165 at 154.502 kb on - strand, within SOA0165 at 154.504 kb on + strand, within SOA0165 at 154.518 kb on - strand, within SOA0165 at 154.533 kb on + strand, within SOA0165 at 154.533 kb on + strand, within SOA0165 at 154.533 kb on + strand, within SOA0165 at 154.541 kb on - strand, within SOA0165 at 154.541 kb on - strand, within SOA0165 at 154.541 kb on - strand, within SOA0165 at 154.541 kb on - strand, within SOA0165 at 154.579 kb on + strand, within SOA0165 at 154.595 kb on + strand, within SOA0165 at 154.595 kb on + strand, within SOA0165 at 154.624 kb on + strand, within SOA0165 at 154.635 kb on + strand, within SOA0165 at 154.648 kb on + strand, within SOA0165 at 154.650 kb on + strand, within SOA0165 at 154.650 kb on + strand, within SOA0165 at 154.650 kb on + strand, within SOA0165 at 154.650 kb on + strand, within SOA0165 at 154.650 kb on + strand, within SOA0165 at 154.658 kb on - strand, within SOA0165 at 154.658 kb on - strand at 154.658 kb on - strand, within SOA0165 at 154.658 kb on - strand, within SOA0165 at 154.662 kb on + strand, within SOA0165 at 154.670 kb on + strand, within SOA0165 at 154.670 kb on - strand, within SOA0165 at 154.678 kb on - strand, within SOA0165 at 154.727 kb on - strand, within SOA0165 at 154.737 kb on - strand, within SOA0165 at 154.748 kb on + strand, within SOA0165 at 154.806 kb on - strand, within SOA0165 at 154.848 kb on - strand, within SOA0165 at 154.886 kb on - strand at 154.951 kb on + strand at 154.951 kb on + strand at 154.958 kb on + strand at 154.959 kb on - strand at 154.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 154,304 - SOA0165 0.24 -1.6 154,316 + SOA0165 0.26 +0.2 154,316 + SOA0165 0.26 +1.0 154,316 + SOA0165 0.26 +0.6 154,316 + SOA0165 0.26 -0.2 154,316 + SOA0165 0.26 -0.1 154,316 + SOA0165 0.26 +0.8 154,316 + SOA0165 0.26 +0.5 154,316 + SOA0165 0.26 -2.3 154,316 + SOA0165 0.26 +1.0 154,316 + SOA0165 0.26 -0.2 154,316 + SOA0165 0.26 -2.5 154,316 + SOA0165 0.26 -0.4 154,324 - SOA0165 0.27 +0.3 154,324 - SOA0165 0.27 -0.0 154,324 - SOA0165 0.27 +0.6 154,324 - SOA0165 0.27 -1.6 154,324 - SOA0165 0.27 +1.6 154,324 - SOA0165 0.27 +0.3 154,324 - SOA0165 0.27 +2.2 154,324 - SOA0165 0.27 -0.2 154,324 - SOA0165 0.27 +0.5 154,324 - SOA0165 0.27 +0.4 154,345 + SOA0165 0.29 +0.5 154,357 + SOA0165 0.30 -0.6 154,445 + SOA0165 0.40 -0.1 154,502 - SOA0165 0.47 -0.5 154,504 + SOA0165 0.47 -0.0 154,518 - SOA0165 0.49 -1.2 154,533 + SOA0165 0.51 -0.4 154,533 + SOA0165 0.51 -0.8 154,533 + SOA0165 0.51 -0.9 154,541 - SOA0165 0.51 -1.3 154,541 - SOA0165 0.51 +0.6 154,541 - SOA0165 0.51 +0.2 154,541 - SOA0165 0.51 +0.4 154,579 + SOA0165 0.56 +0.6 154,595 + SOA0165 0.58 -0.8 154,595 + SOA0165 0.58 +1.2 154,624 + SOA0165 0.61 -0.6 154,635 + SOA0165 0.62 +0.1 154,648 + SOA0165 0.64 +0.6 154,650 + SOA0165 0.64 +2.7 154,650 + SOA0165 0.64 +1.3 154,650 + SOA0165 0.64 -0.1 154,650 + SOA0165 0.64 -1.3 154,650 + SOA0165 0.64 +0.6 154,658 - SOA0165 0.65 -0.1 154,658 - +2.0 154,658 - SOA0165 0.65 -0.1 154,658 - SOA0165 0.65 +0.6 154,662 + SOA0165 0.65 -0.2 154,670 + SOA0165 0.66 +0.8 154,670 - SOA0165 0.66 -0.3 154,678 - SOA0165 0.67 -1.0 154,727 - SOA0165 0.73 +0.3 154,737 - SOA0165 0.74 -1.0 154,748 + SOA0165 0.75 -0.0 154,806 - SOA0165 0.82 +2.0 154,848 - SOA0165 0.87 +0.8 154,886 - +0.6 154,951 + +1.7 154,951 + +2.0 154,958 + +1.6 154,959 - +0.6 154,981 + +0.6
Or see this region's nucleotide sequence