Strain Fitness in Shewanella oneidensis MR-1 around SO3427

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Arg-5 and tRNA-Arg-4 are separated by 83 nucleotidestRNA-Arg-4 and tRNA-Arg-3 are separated by 31 nucleotidestRNA-Arg-3 and tRNA-Ser-3 are separated by 20 nucleotidestRNA-Ser-3 and csrA are separated by 203 nucleotidescsrA and SO3427 are separated by 118 nucleotidesSO3427 and alaS are separated by 9 nucleotides SO_t087: tRNA-Arg-5 - tRNA-Arg (RefSeq), at 3,567,509 to 3,567,585 tRNA-Arg-5 SO_t088: tRNA-Arg-4 - tRNA-Arg (RefSeq), at 3,567,669 to 3,567,745 tRNA-Arg-4 SO_t089: tRNA-Arg-3 - tRNA-Arg (RefSeq), at 3,567,777 to 3,567,853 tRNA-Arg-3 SO_t090: tRNA-Ser-3 - tRNA-Ser (RefSeq), at 3,567,874 to 3,567,965 tRNA-Ser-3 SO3426: csrA - carbon storage regulator (NCBI ptt file), at 3,568,169 to 3,568,366 csrA SO3427: SO3427 - aspartokinase (NCBI ptt file), at 3,568,485 to 3,569,741 SO3427 SO3428: alaS - alanyl-tRNA synthetase (NCBI ptt file), at 3,569,751 to 3,572,375 alaS Position (kb) 3568 3569 3570Strain fitness (log2 ratio) -1 0 1 2at 3568.443 kb on - strandat 3569.756 kb on - strandat 3569.756 kb on - strandat 3569.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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3,568,443 - +2.1
3,569,756 - -0.3
3,569,756 - -0.4
3,569,756 - +1.3

Or see this region's nucleotide sequence