Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3313 and SO3314 overlap by 4 nucleotides SO3314 and SO3315 are separated by 32 nucleotides SO3315 and SO3316 are separated by 144 nucleotides
SO3313: SO3313 - conserved hypothetical protein (NCBI ptt file), at 3,464,948 to 3,466,072
SO3313
SO3314: SO3314 - fimbrial biogenesis and twitching motility protein, putative (NCBI ptt file), at 3,466,069 to 3,466,857
SO3314
SO3315: SO3315 - conserved hypothetical protein TIGR00048 (NCBI ptt file), at 3,466,890 to 3,468,011
SO3315
SO3316: SO3316 - conserved hypothetical protein (NCBI ptt file), at 3,468,156 to 3,469,247
SO3316
Position (kb)
3466
3467
3468
3469 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3465.961 kb on - strand at 3465.961 kb on - strand at 3466.088 kb on - strand at 3466.098 kb on - strand at 3466.108 kb on - strand at 3466.174 kb on - strand, within SO3314 at 3466.291 kb on - strand, within SO3314 at 3466.315 kb on + strand, within SO3314 at 3466.335 kb on - strand, within SO3314 at 3466.461 kb on - strand, within SO3314 at 3466.619 kb on + strand, within SO3314 at 3466.679 kb on - strand, within SO3314 at 3466.741 kb on - strand, within SO3314 at 3466.798 kb on - strand at 3466.808 kb on + strand at 3466.816 kb on - strand at 3466.816 kb on - strand at 3466.816 kb on - strand at 3466.874 kb on - strand at 3466.874 kb on - strand at 3467.091 kb on + strand, within SO3315 at 3467.123 kb on + strand, within SO3315 at 3467.171 kb on - strand, within SO3315 at 3467.234 kb on - strand, within SO3315 at 3467.332 kb on - strand, within SO3315 at 3467.379 kb on - strand, within SO3315 at 3467.417 kb on - strand, within SO3315 at 3467.438 kb on + strand, within SO3315 at 3467.493 kb on + strand, within SO3315 at 3467.493 kb on + strand, within SO3315 at 3467.620 kb on - strand, within SO3315 at 3467.888 kb on - strand, within SO3315 at 3468.013 kb on + strand at 3468.093 kb on - strand at 3468.187 kb on - strand at 3468.230 kb on + strand at 3468.238 kb on - strand at 3468.277 kb on - strand, within SO3316 at 3468.344 kb on + strand, within SO3316 at 3468.370 kb on + strand, within SO3316 at 3468.446 kb on - strand, within SO3316 at 3468.453 kb on + strand, within SO3316 at 3468.516 kb on - strand, within SO3316 at 3468.550 kb on + strand, within SO3316 at 3468.558 kb on - strand, within SO3316 at 3468.623 kb on - strand, within SO3316 at 3468.709 kb on + strand, within SO3316 at 3468.764 kb on + strand, within SO3316 at 3468.795 kb on - strand, within SO3316 at 3468.935 kb on + strand, within SO3316 at 3468.943 kb on - strand, within SO3316
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 3,465,961 - -2.1 3,465,961 - -1.8 3,466,088 - -0.4 3,466,098 - +0.3 3,466,108 - +0.6 3,466,174 - SO3314 0.13 +0.3 3,466,291 - SO3314 0.28 -0.1 3,466,315 + SO3314 0.31 -1.3 3,466,335 - SO3314 0.34 +1.3 3,466,461 - SO3314 0.50 -0.1 3,466,619 + SO3314 0.70 -0.7 3,466,679 - SO3314 0.77 +0.6 3,466,741 - SO3314 0.85 +0.5 3,466,798 - -0.6 3,466,808 + -1.5 3,466,816 - +0.8 3,466,816 - -1.3 3,466,816 - -0.3 3,466,874 - -0.1 3,466,874 - -0.7 3,467,091 + SO3315 0.18 -0.9 3,467,123 + SO3315 0.21 -0.5 3,467,171 - SO3315 0.25 -0.9 3,467,234 - SO3315 0.31 -2.4 3,467,332 - SO3315 0.39 -1.3 3,467,379 - SO3315 0.44 -1.1 3,467,417 - SO3315 0.47 -2.4 3,467,438 + SO3315 0.49 -3.4 3,467,493 + SO3315 0.54 -3.0 3,467,493 + SO3315 0.54 +0.3 3,467,620 - SO3315 0.65 -2.0 3,467,888 - SO3315 0.89 -0.6 3,468,013 + -0.2 3,468,093 - +0.2 3,468,187 - -0.3 3,468,230 + -0.9 3,468,238 - -0.1 3,468,277 - SO3316 0.11 +0.1 3,468,344 + SO3316 0.17 +1.8 3,468,370 + SO3316 0.20 -2.0 3,468,446 - SO3316 0.27 +0.6 3,468,453 + SO3316 0.27 -0.2 3,468,516 - SO3316 0.33 +0.1 3,468,550 + SO3316 0.36 +1.5 3,468,558 - SO3316 0.37 -0.7 3,468,623 - SO3316 0.43 -0.6 3,468,709 + SO3316 0.51 -2.3 3,468,764 + SO3316 0.56 -0.5 3,468,795 - SO3316 0.59 -0.1 3,468,935 + SO3316 0.71 -0.0 3,468,943 - SO3316 0.72 +0.5
Or see this region's nucleotide sequence