Strain Fitness in Shewanella oneidensis MR-1 around SO3315

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3313 and SO3314 overlap by 4 nucleotidesSO3314 and SO3315 are separated by 32 nucleotidesSO3315 and SO3316 are separated by 144 nucleotides SO3313: SO3313 - conserved hypothetical protein (NCBI ptt file), at 3,464,948 to 3,466,072 SO3313 SO3314: SO3314 - fimbrial biogenesis and twitching motility protein, putative (NCBI ptt file), at 3,466,069 to 3,466,857 SO3314 SO3315: SO3315 - conserved hypothetical protein TIGR00048 (NCBI ptt file), at 3,466,890 to 3,468,011 SO3315 SO3316: SO3316 - conserved hypothetical protein (NCBI ptt file), at 3,468,156 to 3,469,247 SO3316 Position (kb) 3466 3467 3468 3469Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3465.961 kb on - strandat 3465.961 kb on - strandat 3466.088 kb on - strandat 3466.098 kb on - strandat 3466.108 kb on - strandat 3466.174 kb on - strand, within SO3314at 3466.291 kb on - strand, within SO3314at 3466.315 kb on + strand, within SO3314at 3466.335 kb on - strand, within SO3314at 3466.461 kb on - strand, within SO3314at 3466.619 kb on + strand, within SO3314at 3466.679 kb on - strand, within SO3314at 3466.741 kb on - strand, within SO3314at 3466.798 kb on - strandat 3466.808 kb on + strandat 3466.816 kb on - strandat 3466.816 kb on - strandat 3466.816 kb on - strandat 3466.874 kb on - strandat 3466.874 kb on - strandat 3467.091 kb on + strand, within SO3315at 3467.123 kb on + strand, within SO3315at 3467.171 kb on - strand, within SO3315at 3467.234 kb on - strand, within SO3315at 3467.332 kb on - strand, within SO3315at 3467.379 kb on - strand, within SO3315at 3467.417 kb on - strand, within SO3315at 3467.438 kb on + strand, within SO3315at 3467.493 kb on + strand, within SO3315at 3467.493 kb on + strand, within SO3315at 3467.620 kb on - strand, within SO3315at 3467.888 kb on - strand, within SO3315at 3468.013 kb on + strandat 3468.093 kb on - strandat 3468.187 kb on - strandat 3468.230 kb on + strandat 3468.238 kb on - strandat 3468.277 kb on - strand, within SO3316at 3468.344 kb on + strand, within SO3316at 3468.370 kb on + strand, within SO3316at 3468.446 kb on - strand, within SO3316at 3468.453 kb on + strand, within SO3316at 3468.516 kb on - strand, within SO3316at 3468.550 kb on + strand, within SO3316at 3468.558 kb on - strand, within SO3316at 3468.623 kb on - strand, within SO3316at 3468.709 kb on + strand, within SO3316at 3468.764 kb on + strand, within SO3316at 3468.795 kb on - strand, within SO3316at 3468.935 kb on + strand, within SO3316at 3468.943 kb on - strand, within SO3316

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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3,465,961 - -2.1
3,465,961 - -1.8
3,466,088 - -0.4
3,466,098 - +0.3
3,466,108 - +0.6
3,466,174 - SO3314 0.13 +0.3
3,466,291 - SO3314 0.28 -0.1
3,466,315 + SO3314 0.31 -1.3
3,466,335 - SO3314 0.34 +1.3
3,466,461 - SO3314 0.50 -0.1
3,466,619 + SO3314 0.70 -0.7
3,466,679 - SO3314 0.77 +0.6
3,466,741 - SO3314 0.85 +0.5
3,466,798 - -0.6
3,466,808 + -1.5
3,466,816 - +0.8
3,466,816 - -1.3
3,466,816 - -0.3
3,466,874 - -0.1
3,466,874 - -0.7
3,467,091 + SO3315 0.18 -0.9
3,467,123 + SO3315 0.21 -0.5
3,467,171 - SO3315 0.25 -0.9
3,467,234 - SO3315 0.31 -2.4
3,467,332 - SO3315 0.39 -1.3
3,467,379 - SO3315 0.44 -1.1
3,467,417 - SO3315 0.47 -2.4
3,467,438 + SO3315 0.49 -3.4
3,467,493 + SO3315 0.54 -3.0
3,467,493 + SO3315 0.54 +0.3
3,467,620 - SO3315 0.65 -2.0
3,467,888 - SO3315 0.89 -0.6
3,468,013 + -0.2
3,468,093 - +0.2
3,468,187 - -0.3
3,468,230 + -0.9
3,468,238 - -0.1
3,468,277 - SO3316 0.11 +0.1
3,468,344 + SO3316 0.17 +1.8
3,468,370 + SO3316 0.20 -2.0
3,468,446 - SO3316 0.27 +0.6
3,468,453 + SO3316 0.27 -0.2
3,468,516 - SO3316 0.33 +0.1
3,468,550 + SO3316 0.36 +1.5
3,468,558 - SO3316 0.37 -0.7
3,468,623 - SO3316 0.43 -0.6
3,468,709 + SO3316 0.51 -2.3
3,468,764 + SO3316 0.56 -0.5
3,468,795 - SO3316 0.59 -0.1
3,468,935 + SO3316 0.71 -0.0
3,468,943 - SO3316 0.72 +0.5

Or see this region's nucleotide sequence