Strain Fitness in Shewanella oneidensis MR-1 around SO2988

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntO and SO2986 are separated by 110 nucleotidesSO2986 and SO2987 overlap by 1 nucleotidesSO2987 and SO2988 overlap by 8 nucleotidesSO2988 and SO2989 are separated by 27 nucleotidesSO2989 and SO2990 are separated by 89 nucleotides SO2985: O - prophage LambdaSo, replication protein O (NCBI ptt file), at 3,111,160 to 3,112,176 O SO2986: SO2986 - hypothetical protein (NCBI ptt file), at 3,112,287 to 3,112,580 SO2986 SO2987: SO2987 - hypothetical protein (NCBI ptt file), at 3,112,580 to 3,112,774 SO2987 SO2988: SO2988 - conserved hypothetical protein (NCBI ptt file), at 3,112,767 to 3,113,276 SO2988 SO2989: SO2989 - prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file), at 3,113,304 to 3,113,570 SO2989 SO2990: SO2990 - prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file), at 3,113,660 to 3,114,478 SO2990 Position (kb) 3112 3113 3114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3111.979 kb on - strand, within Oat 3112.047 kb on + strand, within Oat 3112.118 kb on + strandat 3112.317 kb on + strand, within SO2986at 3112.362 kb on + strand, within SO2986at 3112.458 kb on - strand, within SO2986at 3112.493 kb on - strand, within SO2986at 3112.566 kb on + strandat 3112.704 kb on - strand, within SO2987at 3112.722 kb on + strand, within SO2987at 3112.722 kb on + strand, within SO2987at 3112.730 kb on - strand, within SO2987at 3112.797 kb on + strandat 3112.805 kb on - strandat 3112.814 kb on - strandat 3112.858 kb on + strand, within SO2988at 3112.866 kb on - strand, within SO2988at 3112.866 kb on - strand, within SO2988at 3113.015 kb on + strand, within SO2988at 3113.023 kb on - strand, within SO2988at 3113.192 kb on - strand, within SO2988at 3113.202 kb on - strand, within SO2988at 3113.229 kb on - strandat 3113.234 kb on - strandat 3113.365 kb on + strand, within SO2989at 3113.375 kb on + strand, within SO2989at 3113.392 kb on - strand, within SO2989at 3113.431 kb on + strand, within SO2989at 3113.447 kb on - strand, within SO2989at 3113.511 kb on + strand, within SO2989at 3113.515 kb on + strand, within SO2989

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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3,111,979 - O SO2985 0.81 -0.2
3,112,047 + O SO2985 0.87 -0.2
3,112,118 + +0.2
3,112,317 + SO2986 0.10 +1.0
3,112,362 + SO2986 0.26 -0.7
3,112,458 - SO2986 0.58 -1.0
3,112,493 - SO2986 0.70 -1.3
3,112,566 + -1.1
3,112,704 - SO2987 0.64 -1.7
3,112,722 + SO2987 0.73 +0.1
3,112,722 + SO2987 0.73 +0.2
3,112,730 - SO2987 0.77 -2.6
3,112,797 + +2.3
3,112,805 - -3.7
3,112,814 - -2.5
3,112,858 + SO2988 0.18 -0.4
3,112,866 - SO2988 0.19 -1.7
3,112,866 - SO2988 0.19 -1.8
3,113,015 + SO2988 0.49 +0.3
3,113,023 - SO2988 0.50 -1.9
3,113,192 - SO2988 0.83 -2.5
3,113,202 - SO2988 0.85 -1.1
3,113,229 - -1.0
3,113,234 - -0.5
3,113,365 + SO2989 0.23 -0.6
3,113,375 + SO2989 0.27 +0.6
3,113,392 - SO2989 0.33 -1.7
3,113,431 + SO2989 0.48 +0.6
3,113,447 - SO2989 0.54 -0.3
3,113,511 + SO2989 0.78 -1.1
3,113,515 + SO2989 0.79 +1.4

Or see this region's nucleotide sequence