Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt O and SO2986 are separated by 110 nucleotides SO2986 and SO2987 overlap by 1 nucleotides SO2987 and SO2988 overlap by 8 nucleotides SO2988 and SO2989 are separated by 27 nucleotides SO2989 and SO2990 are separated by 89 nucleotides
SO2985: O - prophage LambdaSo, replication protein O (NCBI ptt file), at 3,111,160 to 3,112,176
O
SO2986: SO2986 - hypothetical protein (NCBI ptt file), at 3,112,287 to 3,112,580
SO2986
SO2987: SO2987 - hypothetical protein (NCBI ptt file), at 3,112,580 to 3,112,774
SO2987
SO2988: SO2988 - conserved hypothetical protein (NCBI ptt file), at 3,112,767 to 3,113,276
SO2988
SO2989: SO2989 - prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file), at 3,113,304 to 3,113,570
SO2989
SO2990: SO2990 - prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file), at 3,113,660 to 3,114,478
SO2990
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3111.979 kb on - strand, within O at 3112.047 kb on + strand, within O at 3112.118 kb on + strand at 3112.317 kb on + strand, within SO2986 at 3112.362 kb on + strand, within SO2986 at 3112.458 kb on - strand, within SO2986 at 3112.493 kb on - strand, within SO2986 at 3112.566 kb on + strand at 3112.704 kb on - strand, within SO2987 at 3112.722 kb on + strand, within SO2987 at 3112.722 kb on + strand, within SO2987 at 3112.730 kb on - strand, within SO2987 at 3112.797 kb on + strand at 3112.805 kb on - strand at 3112.814 kb on - strand at 3112.858 kb on + strand, within SO2988 at 3112.866 kb on - strand, within SO2988 at 3112.866 kb on - strand, within SO2988 at 3113.015 kb on + strand, within SO2988 at 3113.023 kb on - strand, within SO2988 at 3113.192 kb on - strand, within SO2988 at 3113.202 kb on - strand, within SO2988 at 3113.229 kb on - strand at 3113.234 kb on - strand at 3113.365 kb on + strand, within SO2989 at 3113.375 kb on + strand, within SO2989 at 3113.392 kb on - strand, within SO2989 at 3113.431 kb on + strand, within SO2989 at 3113.447 kb on - strand, within SO2989 at 3113.511 kb on + strand, within SO2989 at 3113.515 kb on + strand, within SO2989
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 3,111,979 - O SO2985 0.81 -0.2 3,112,047 + O SO2985 0.87 -0.2 3,112,118 + +0.2 3,112,317 + SO2986 0.10 +1.0 3,112,362 + SO2986 0.26 -0.7 3,112,458 - SO2986 0.58 -1.0 3,112,493 - SO2986 0.70 -1.3 3,112,566 + -1.1 3,112,704 - SO2987 0.64 -1.7 3,112,722 + SO2987 0.73 +0.1 3,112,722 + SO2987 0.73 +0.2 3,112,730 - SO2987 0.77 -2.6 3,112,797 + +2.3 3,112,805 - -3.7 3,112,814 - -2.5 3,112,858 + SO2988 0.18 -0.4 3,112,866 - SO2988 0.19 -1.7 3,112,866 - SO2988 0.19 -1.8 3,113,015 + SO2988 0.49 +0.3 3,113,023 - SO2988 0.50 -1.9 3,113,192 - SO2988 0.83 -2.5 3,113,202 - SO2988 0.85 -1.1 3,113,229 - -1.0 3,113,234 - -0.5 3,113,365 + SO2989 0.23 -0.6 3,113,375 + SO2989 0.27 +0.6 3,113,392 - SO2989 0.33 -1.7 3,113,431 + SO2989 0.48 +0.6 3,113,447 - SO2989 0.54 -0.3 3,113,511 + SO2989 0.78 -1.1 3,113,515 + SO2989 0.79 +1.4
Or see this region's nucleotide sequence