Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2434 and SO2435 are separated by 150 nucleotides SO2435 and SO2436 overlap by 4 nucleotides SO2436 and SO2437 are separated by 63 nucleotides
SO2434: SO2434 - extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file), at 2,543,523 to 2,546,336
SO2434
SO2435: SO2435 - methyltransferase, putative (NCBI ptt file), at 2,546,487 to 2,547,218
SO2435
SO2436: SO2436 - methyltransferase, putative (NCBI ptt file), at 2,547,215 to 2,548,207
SO2436
SO2437: SO2437 - hypothetical protein (NCBI ptt file), at 2,548,271 to 2,550,166
SO2437
Position (kb)
2547
2548
2549 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2546.230 kb on + strand at 2546.257 kb on + strand at 2546.266 kb on + strand at 2546.269 kb on - strand at 2546.294 kb on - strand at 2546.304 kb on - strand at 2546.352 kb on - strand at 2546.595 kb on + strand, within SO2435 at 2546.654 kb on + strand, within SO2435 at 2546.813 kb on + strand, within SO2435 at 2546.869 kb on + strand, within SO2435 at 2546.869 kb on + strand, within SO2435 at 2546.884 kb on + strand, within SO2435 at 2547.153 kb on + strand at 2547.155 kb on - strand at 2547.161 kb on - strand at 2547.164 kb on + strand at 2547.747 kb on - strand, within SO2436 at 2547.779 kb on + strand, within SO2436 at 2547.787 kb on - strand, within SO2436 at 2547.986 kb on + strand, within SO2436 at 2548.027 kb on - strand, within SO2436 at 2548.076 kb on - strand, within SO2436 at 2548.204 kb on - strand at 2548.228 kb on + strand at 2548.228 kb on + strand at 2548.267 kb on + strand at 2548.267 kb on + strand at 2548.267 kb on + strand at 2548.349 kb on + strand at 2548.460 kb on - strand at 2548.466 kb on + strand, within SO2437 at 2548.474 kb on - strand, within SO2437 at 2548.474 kb on - strand, within SO2437 at 2548.568 kb on + strand, within SO2437 at 2548.576 kb on - strand, within SO2437 at 2548.792 kb on - strand, within SO2437 at 2548.805 kb on + strand, within SO2437 at 2548.805 kb on + strand, within SO2437 at 2548.876 kb on + strand, within SO2437 at 2549.198 kb on + strand, within SO2437
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 2,546,230 + -1.2 2,546,257 + +0.9 2,546,266 + +1.1 2,546,269 - +0.3 2,546,294 - -0.6 2,546,304 - +0.3 2,546,352 - -0.1 2,546,595 + SO2435 0.15 -1.1 2,546,654 + SO2435 0.23 -1.5 2,546,813 + SO2435 0.45 -1.4 2,546,869 + SO2435 0.52 -1.7 2,546,869 + SO2435 0.52 +2.7 2,546,884 + SO2435 0.54 +0.3 2,547,153 + -2.9 2,547,155 - +0.2 2,547,161 - +0.7 2,547,164 + -2.7 2,547,747 - SO2436 0.54 -1.7 2,547,779 + SO2436 0.57 -2.3 2,547,787 - SO2436 0.58 -0.7 2,547,986 + SO2436 0.78 -2.4 2,548,027 - SO2436 0.82 -1.9 2,548,076 - SO2436 0.87 -1.2 2,548,204 - -0.2 2,548,228 + -1.2 2,548,228 + -0.3 2,548,267 + -1.4 2,548,267 + -0.8 2,548,267 + -0.3 2,548,349 + +1.5 2,548,460 - +1.7 2,548,466 + SO2437 0.10 +1.9 2,548,474 - SO2437 0.11 +0.7 2,548,474 - SO2437 0.11 +1.2 2,548,568 + SO2437 0.16 +0.2 2,548,576 - SO2437 0.16 +0.6 2,548,792 - SO2437 0.27 +1.5 2,548,805 + SO2437 0.28 +1.6 2,548,805 + SO2437 0.28 +1.4 2,548,876 + SO2437 0.32 +1.9 2,549,198 + SO2437 0.49 +0.7
Or see this region's nucleotide sequence