Strain Fitness in Shewanella oneidensis MR-1 around SO2257

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmfd and SO2256 are separated by 86 nucleotidesSO2256 and lolE are separated by 94 nucleotideslolE and lolD are separated by 98 nucleotideslolD and SO2259 overlap by 4 nucleotides SO2255: mfd - transcription-repair coupling factor (NCBI ptt file), at 2,367,847 to 2,371,341 mfd SO2256: SO2256 - conserved hypothetical protein (NCBI ptt file), at 2,371,428 to 2,372,048 SO2256 SO2257: lolE - lipoprotein releasing system transmembrane protein LolE (NCBI ptt file), at 2,372,143 to 2,373,375 lolE SO2258: lolD - lipoprotein releasing system ATP-binding protein LolD (NCBI ptt file), at 2,373,474 to 2,374,166 lolD SO2259: SO2259 - lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file), at 2,374,163 to 2,375,413 SO2259 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -1 0 1at 2371.161 kb on + strandat 2371.169 kb on - strandat 2371.224 kb on - strandat 2371.621 kb on - strand, within SO2256at 2371.629 kb on - strand, within SO2256at 2371.809 kb on - strand, within SO2256at 2371.853 kb on - strand, within SO2256

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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2,371,161 + +0.5
2,371,169 - -0.5
2,371,224 - -1.1
2,371,621 - SO2256 0.31 +0.3
2,371,629 - SO2256 0.32 +0.6
2,371,809 - SO2256 0.61 +0.3
2,371,853 - SO2256 0.68 +0.1

Or see this region's nucleotide sequence