Strain Fitness in Shewanella oneidensis MR-1 around SO1894

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmvaB and SO1894 are separated by 1 nucleotidesSO1894 and SO1895 overlap by 1 nucleotidesSO1895 and pccB-1 are separated by 46 nucleotides SO1893: mvaB - hydroxymethylglutaryl-CoA lyase (NCBI ptt file), at 1,989,479 to 1,990,426 mvaB SO1894: SO1894 - acetyl-CoA carboxylase, biotin carboxylase, putative (NCBI ptt file), at 1,990,428 to 1,992,512 SO1894 SO1895: SO1895 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 1,992,512 to 1,993,378 SO1895 SO1896: pccB-1 - 3-methylcrotonyl CoA carboxylase, beta subunit (NCBI ptt file), at 1,993,425 to 1,995,032 pccB-1 Position (kb) 1990 1991 1992 1993Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1990.469 kb on + strandat 1990.553 kb on - strandat 1990.591 kb on + strandat 1990.591 kb on + strandat 1990.591 kb on + strandat 1990.599 kb on - strandat 1990.599 kb on - strandat 1990.599 kb on - strandat 1990.623 kb on + strandat 1990.631 kb on - strandat 1990.633 kb on + strandat 1990.700 kb on - strand, within SO1894at 1990.726 kb on + strand, within SO1894at 1990.726 kb on + strand, within SO1894at 1990.734 kb on - strand, within SO1894at 1990.817 kb on + strand, within SO1894at 1990.959 kb on - strand, within SO1894at 1990.964 kb on - strand, within SO1894at 1990.994 kb on - strand, within SO1894at 1991.175 kb on - strand, within SO1894at 1991.262 kb on + strand, within SO1894at 1991.386 kb on + strand, within SO1894at 1991.474 kb on + strand, within SO1894at 1991.482 kb on - strand, within SO1894at 1991.592 kb on + strand, within SO1894at 1991.611 kb on + strand, within SO1894at 1991.789 kb on + strand, within SO1894at 1992.007 kb on + strand, within SO1894at 1992.007 kb on + strand, within SO1894at 1992.015 kb on - strand, within SO1894at 1992.194 kb on + strand, within SO1894at 1992.234 kb on + strand, within SO1894at 1992.409 kb on + strandat 1992.409 kb on + strandat 1992.409 kb on + strandat 1992.409 kb on + strandat 1992.409 kb on + strandat 1992.417 kb on - strandat 1992.417 kb on - strandat 1992.417 kb on - strandat 1992.427 kb on - strandat 1992.495 kb on + strandat 1992.584 kb on + strandat 1992.663 kb on + strand, within SO1895at 1992.826 kb on + strand, within SO1895at 1992.968 kb on + strand, within SO1895at 1992.980 kb on + strand, within SO1895at 1992.980 kb on + strand, within SO1895at 1993.056 kb on + strand, within SO1895at 1993.228 kb on + strand, within SO1895at 1993.261 kb on + strand, within SO1895at 1993.312 kb on + strandat 1993.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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1,990,469 + +0.9
1,990,553 - -1.1
1,990,591 + -0.4
1,990,591 + -0.5
1,990,591 + -3.8
1,990,599 - -0.9
1,990,599 - -3.4
1,990,599 - -1.5
1,990,623 + -2.2
1,990,631 - -2.7
1,990,633 + -3.8
1,990,700 - SO1894 0.13 -1.9
1,990,726 + SO1894 0.14 -2.8
1,990,726 + SO1894 0.14 -2.3
1,990,734 - SO1894 0.15 -2.9
1,990,817 + SO1894 0.19 -1.5
1,990,959 - SO1894 0.25 -1.9
1,990,964 - SO1894 0.26 -3.1
1,990,994 - SO1894 0.27 -1.1
1,991,175 - SO1894 0.36 -2.4
1,991,262 + SO1894 0.40 -2.2
1,991,386 + SO1894 0.46 -3.4
1,991,474 + SO1894 0.50 -2.7
1,991,482 - SO1894 0.51 -1.8
1,991,592 + SO1894 0.56 -3.2
1,991,611 + SO1894 0.57 +0.8
1,991,789 + SO1894 0.65 -2.5
1,992,007 + SO1894 0.76 -4.4
1,992,007 + SO1894 0.76 -1.0
1,992,015 - SO1894 0.76 -2.8
1,992,194 + SO1894 0.85 -3.1
1,992,234 + SO1894 0.87 -0.3
1,992,409 + +0.8
1,992,409 + -2.9
1,992,409 + -1.9
1,992,409 + -0.9
1,992,409 + -3.4
1,992,417 - -2.2
1,992,417 - -3.6
1,992,417 - -1.6
1,992,427 - -1.6
1,992,495 + +0.1
1,992,584 + -0.9
1,992,663 + SO1895 0.17 -2.2
1,992,826 + SO1895 0.36 -3.2
1,992,968 + SO1895 0.53 -2.8
1,992,980 + SO1895 0.54 -1.9
1,992,980 + SO1895 0.54 -1.4
1,993,056 + SO1895 0.63 -1.4
1,993,228 + SO1895 0.83 -3.7
1,993,261 + SO1895 0.86 -2.4
1,993,312 + -1.6
1,993,355 + -0.9

Or see this region's nucleotide sequence