Strain Fitness in Shewanella oneidensis MR-1 around SO1533

Experiment: Gly-DL-Asp (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntthiI and SO1532 are separated by 132 nucleotidesSO1532 and SO1533 are separated by 176 nucleotidesSO1533 and SO1534 are separated by 4 nucleotidesSO1534 and SO1535 are separated by 95 nucleotides SO1531: thiI - thiamine biosynthesis protein ThiI (NCBI ptt file), at 1,606,408 to 1,607,862 thiI SO1532: SO1532 - hypothetical protein (NCBI ptt file), at 1,607,995 to 1,608,228 SO1532 SO1533: SO1533 - glycine cleavage system transcriptional activator, putative (NCBI ptt file), at 1,608,405 to 1,609,316 SO1533 SO1534: SO1534 - conserved hypothetical protein (NCBI ptt file), at 1,609,321 to 1,609,968 SO1534 SO1535: SO1535 - conserved hypothetical protein (NCBI ptt file), at 1,610,064 to 1,610,456 SO1535 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1607.411 kb on - strand, within thiIat 1607.427 kb on + strand, within thiIat 1607.435 kb on - strand, within thiIat 1607.484 kb on + strand, within thiIat 1607.484 kb on + strand, within thiIat 1607.492 kb on - strand, within thiIat 1607.498 kb on - strand, within thiIat 1607.688 kb on + strand, within thiIat 1607.796 kb on - strandat 1607.870 kb on + strandat 1607.914 kb on + strandat 1607.967 kb on + strandat 1608.030 kb on - strand, within SO1532at 1608.126 kb on - strand, within SO1532at 1608.154 kb on + strand, within SO1532at 1608.242 kb on - strandat 1608.242 kb on - strandat 1608.286 kb on - strandat 1608.506 kb on + strand, within SO1533at 1608.663 kb on + strand, within SO1533at 1608.859 kb on + strand, within SO1533at 1608.859 kb on + strand, within SO1533at 1608.859 kb on + strand, within SO1533at 1608.918 kb on + strand, within SO1533at 1608.939 kb on - strand, within SO1533at 1609.118 kb on + strand, within SO1533at 1609.126 kb on - strand, within SO1533at 1609.126 kb on - strand, within SO1533at 1609.126 kb on - strand, within SO1533at 1609.190 kb on - strand, within SO1533at 1609.208 kb on - strand, within SO1533at 1609.238 kb on + strandat 1609.238 kb on + strandat 1609.238 kb on + strandat 1609.246 kb on - strandat 1609.270 kb on - strandat 1609.320 kb on - strandat 1609.408 kb on - strand, within SO1534at 1609.441 kb on + strand, within SO1534at 1609.450 kb on - strand, within SO1534at 1609.450 kb on - strand, within SO1534at 1609.536 kb on - strand, within SO1534at 1609.599 kb on + strand, within SO1534at 1609.620 kb on - strand, within SO1534at 1609.737 kb on + strand, within SO1534at 1609.737 kb on + strand, within SO1534at 1609.745 kb on - strand, within SO1534at 1609.750 kb on - strand, within SO1534at 1609.758 kb on - strand, within SO1534at 1609.783 kb on - strand, within SO1534at 1609.784 kb on + strand, within SO1534at 1609.849 kb on - strand, within SO1534at 1609.925 kb on + strandat 1610.048 kb on - strandat 1610.158 kb on + strand, within SO1535at 1610.166 kb on - strand, within SO1535at 1610.212 kb on + strand, within SO1535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
remove
1,607,411 - thiI SO1531 0.69 +0.3
1,607,427 + thiI SO1531 0.70 -0.3
1,607,435 - thiI SO1531 0.71 -1.4
1,607,484 + thiI SO1531 0.74 -0.8
1,607,484 + thiI SO1531 0.74 -0.7
1,607,492 - thiI SO1531 0.75 -0.9
1,607,498 - thiI SO1531 0.75 -0.8
1,607,688 + thiI SO1531 0.88 -0.3
1,607,796 - -1.1
1,607,870 + +0.4
1,607,914 + -0.3
1,607,967 + +0.7
1,608,030 - SO1532 0.15 +0.9
1,608,126 - SO1532 0.56 -0.7
1,608,154 + SO1532 0.68 +1.2
1,608,242 - +0.5
1,608,242 - -0.5
1,608,286 - -0.3
1,608,506 + SO1533 0.11 -3.8
1,608,663 + SO1533 0.28 +0.3
1,608,859 + SO1533 0.50 -3.5
1,608,859 + SO1533 0.50 -1.3
1,608,859 + SO1533 0.50 -3.1
1,608,918 + SO1533 0.56 -1.0
1,608,939 - SO1533 0.59 -1.7
1,609,118 + SO1533 0.78 -2.9
1,609,126 - SO1533 0.79 -4.9
1,609,126 - SO1533 0.79 -2.7
1,609,126 - SO1533 0.79 -2.7
1,609,190 - SO1533 0.86 -1.3
1,609,208 - SO1533 0.88 -0.7
1,609,238 + -1.0
1,609,238 + -3.3
1,609,238 + -2.7
1,609,246 - -2.6
1,609,270 - -2.5
1,609,320 - -0.3
1,609,408 - SO1534 0.13 +0.1
1,609,441 + SO1534 0.19 -0.8
1,609,450 - SO1534 0.20 -0.5
1,609,450 - SO1534 0.20 -0.8
1,609,536 - SO1534 0.33 +0.1
1,609,599 + SO1534 0.43 -0.4
1,609,620 - SO1534 0.46 -0.2
1,609,737 + SO1534 0.64 -0.5
1,609,737 + SO1534 0.64 -2.1
1,609,745 - SO1534 0.65 +0.1
1,609,750 - SO1534 0.66 -0.5
1,609,758 - SO1534 0.67 -0.7
1,609,783 - SO1534 0.71 -0.3
1,609,784 + SO1534 0.71 -1.0
1,609,849 - SO1534 0.81 +0.1
1,609,925 + -0.3
1,610,048 - +0.7
1,610,158 + SO1535 0.24 -0.8
1,610,166 - SO1535 0.26 +0.1
1,610,212 + SO1535 0.38 -0.9

Or see this region's nucleotide sequence