Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0653 and SO0654 are separated by 35 nucleotides SO0654 and SO0655 are separated by 38 nucleotides SO0655 and SO0656 are separated by 148 nucleotides SO0656 and SO0657 are separated by 59 nucleotides
SO0653: SO0653 - hypothetical protein (NCBI ptt file), at 677,098 to 677,898
SO0653
SO0654: SO0654 - hypothetical protein (NCBI ptt file), at 677,934 to 678,491
SO0654
SO0655: SO0655 - hypothetical protein (NCBI ptt file), at 678,530 to 678,958
SO0655
SO0656: SO0656 - ISSod1, transposase OrfA (NCBI ptt file), at 679,107 to 679,397
SO0656
SO0657: SO0657 - ISSod1, transposase OrfB (NCBI ptt file), at 679,457 to 680,266
SO0657
Position (kb) 678
679 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 677.537 kb on - strand, within SO0653 at 677.540 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.563 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.569 kb on - strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.574 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.582 kb on - strand, within SO0653 at 677.589 kb on - strand, within SO0653 at 677.614 kb on - strand, within SO0653 at 677.615 kb on - strand, within SO0653 at 677.652 kb on + strand, within SO0653 at 677.755 kb on - strand, within SO0653 at 677.766 kb on - strand, within SO0653 at 677.794 kb on + strand, within SO0653 at 677.817 kb on + strand, within SO0653 at 677.823 kb on - strand at 677.831 kb on - strand at 677.842 kb on - strand at 677.850 kb on - strand at 677.861 kb on - strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.875 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.967 kb on + strand at 677.973 kb on + strand at 677.973 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.975 kb on - strand at 677.979 kb on + strand at 677.981 kb on + strand at 677.982 kb on - strand at 677.989 kb on + strand at 677.989 kb on - strand at 678.003 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654 at 678.033 kb on + strand, within SO0654 at 678.047 kb on + strand, within SO0654 at 678.049 kb on - strand, within SO0654 at 678.053 kb on - strand, within SO0654 at 678.055 kb on - strand, within SO0654 at 678.064 kb on + strand, within SO0654 at 678.064 kb on + strand, within SO0654 at 678.065 kb on + strand, within SO0654 at 678.065 kb on + strand, within SO0654 at 678.065 kb on + strand, within SO0654 at 678.065 kb on + strand, within SO0654 at 678.072 kb on - strand, within SO0654 at 678.073 kb on - strand, within SO0654 at 678.073 kb on - strand, within SO0654 at 678.156 kb on - strand, within SO0654 at 678.159 kb on + strand, within SO0654 at 678.168 kb on + strand, within SO0654 at 678.170 kb on + strand, within SO0654 at 678.178 kb on - strand, within SO0654 at 678.178 kb on - strand, within SO0654 at 678.180 kb on + strand, within SO0654 at 678.180 kb on + strand, within SO0654 at 678.203 kb on + strand, within SO0654 at 678.203 kb on + strand, within SO0654 at 678.203 kb on + strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.211 kb on - strand, within SO0654 at 678.223 kb on + strand, within SO0654 at 678.240 kb on + strand, within SO0654 at 678.243 kb on - strand, within SO0654 at 678.257 kb on + strand, within SO0654 at 678.266 kb on - strand, within SO0654 at 678.286 kb on + strand, within SO0654 at 678.287 kb on - strand, within SO0654 at 678.306 kb on + strand, within SO0654 at 678.306 kb on + strand, within SO0654 at 678.314 kb on - strand, within SO0654 at 678.314 kb on - strand, within SO0654 at 678.322 kb on + strand, within SO0654 at 678.335 kb on + strand, within SO0654 at 678.335 kb on + strand, within SO0654 at 678.348 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.356 kb on + strand, within SO0654 at 678.364 kb on - strand, within SO0654 at 678.364 kb on - strand, within SO0654 at 678.364 kb on - strand, within SO0654 at 678.364 kb on - strand, within SO0654 at 678.373 kb on + strand, within SO0654 at 678.385 kb on + strand, within SO0654 at 678.385 kb on + strand, within SO0654 at 678.386 kb on + strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.393 kb on - strand, within SO0654 at 678.398 kb on + strand, within SO0654 at 678.405 kb on - strand, within SO0654 at 678.411 kb on - strand, within SO0654 at 678.411 kb on - strand, within SO0654 at 678.430 kb on + strand, within SO0654 at 678.437 kb on + strand at 678.478 kb on - strand at 678.524 kb on + strand at 678.532 kb on - strand at 678.547 kb on + strand at 678.555 kb on - strand at 678.610 kb on + strand, within SO0655 at 678.618 kb on - strand, within SO0655 at 678.654 kb on + strand, within SO0655 at 678.655 kb on + strand, within SO0655 at 678.655 kb on + strand, within SO0655 at 678.655 kb on + strand, within SO0655 at 678.655 kb on + strand, within SO0655 at 678.662 kb on - strand, within SO0655 at 678.663 kb on - strand, within SO0655 at 678.691 kb on - strand, within SO0655 at 678.697 kb on - strand, within SO0655 at 678.703 kb on + strand, within SO0655 at 678.704 kb on - strand, within SO0655 at 678.711 kb on - strand, within SO0655 at 678.747 kb on - strand, within SO0655 at 678.759 kb on - strand, within SO0655 at 678.769 kb on + strand, within SO0655 at 678.856 kb on + strand, within SO0655 at 678.911 kb on + strand, within SO0655 at 678.911 kb on + strand, within SO0655 at 678.911 kb on + strand, within SO0655 at 678.918 kb on + strand at 678.920 kb on + strand at 678.920 kb on + strand at 678.944 kb on + strand at 678.945 kb on - strand at 678.979 kb on + strand at 678.979 kb on + strand at 678.980 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.987 kb on + strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.995 kb on - strand at 678.996 kb on - strand at 679.001 kb on + strand at 679.019 kb on - strand at 679.049 kb on - strand at 679.049 kb on - strand at 679.049 kb on - strand at 679.049 kb on - strand at 679.049 kb on - strand at 679.049 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.054 kb on - strand at 679.055 kb on - strand at 679.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 677,537 - SO0653 0.55 +0.4 677,540 + SO0653 0.55 +0.2 677,558 + SO0653 0.57 +0.1 677,558 + SO0653 0.57 +0.2 677,558 + SO0653 0.57 -0.5 677,558 + SO0653 0.57 +0.9 677,563 + SO0653 0.58 +0.6 677,566 + SO0653 0.58 -0.2 677,566 + SO0653 0.58 -0.5 677,566 - SO0653 0.58 -0.0 677,566 - SO0653 0.58 +0.7 677,566 - SO0653 0.58 +1.4 677,569 - SO0653 0.59 +0.4 677,573 + SO0653 0.59 +1.3 677,573 + SO0653 0.59 -0.6 677,573 + SO0653 0.59 -0.4 677,573 + SO0653 0.59 +0.5 677,573 + SO0653 0.59 +0.1 677,573 + SO0653 0.59 -0.2 677,573 + SO0653 0.59 +0.1 677,573 + SO0653 0.59 +0.3 677,573 + SO0653 0.59 -0.7 677,573 + SO0653 0.59 +0.6 677,573 + SO0653 0.59 -0.3 677,573 + SO0653 0.59 -0.6 677,574 - SO0653 0.59 -0.5 677,581 - SO0653 0.60 +0.3 677,581 - SO0653 0.60 -0.4 677,581 - SO0653 0.60 +0.7 677,581 - SO0653 0.60 -0.1 677,581 - SO0653 0.60 +0.5 677,581 - SO0653 0.60 +0.5 677,581 - SO0653 0.60 +0.1 677,581 - SO0653 0.60 +0.7 677,581 - SO0653 0.60 +0.5 677,582 - SO0653 0.60 +0.6 677,589 - SO0653 0.61 +0.2 677,614 - SO0653 0.64 -0.1 677,615 - SO0653 0.65 +0.5 677,652 + SO0653 0.69 -0.1 677,755 - SO0653 0.82 -0.0 677,766 - SO0653 0.83 +1.2 677,794 + SO0653 0.87 -0.9 677,817 + SO0653 0.90 -0.4 677,823 - -0.1 677,831 - -0.4 677,842 - +0.3 677,850 - -0.3 677,861 - -0.4 677,862 + -0.7 677,862 + -1.1 677,862 + +0.5 677,870 - -0.0 677,870 - +0.9 677,870 - -0.4 677,870 - -0.1 677,870 - -0.8 677,872 + -0.0 677,872 + +0.0 677,872 + +0.5 677,872 + +0.0 677,872 + -0.0 677,872 + +0.1 677,872 + +0.8 677,872 + -0.3 677,872 + +0.1 677,872 + -0.6 677,872 + +0.4 677,872 + -0.2 677,872 + +0.2 677,872 + -0.3 677,875 - +0.3 677,880 - -0.5 677,880 - -0.2 677,880 - +0.3 677,880 - +0.0 677,880 - +0.3 677,880 - +0.8 677,880 - +0.4 677,880 - +0.4 677,880 - -1.4 677,880 - -0.8 677,880 - +0.1 677,880 - +2.4 677,967 + +0.3 677,973 + +1.2 677,973 + -0.7 677,974 + +1.8 677,974 + -0.5 677,974 + -1.2 677,974 + -0.8 677,975 - +0.4 677,979 + -0.0 677,981 + +1.1 677,982 - -0.4 677,989 + +0.8 677,989 - -1.8 678,003 - SO0654 0.12 -0.7 678,016 - SO0654 0.15 -0.0 678,016 - SO0654 0.15 -1.5 678,033 + SO0654 0.18 +0.4 678,047 + SO0654 0.20 +0.3 678,049 - SO0654 0.21 +0.4 678,053 - SO0654 0.21 -0.0 678,055 - SO0654 0.22 -0.7 678,064 + SO0654 0.23 +0.3 678,064 + SO0654 0.23 +0.4 678,065 + SO0654 0.23 +0.3 678,065 + SO0654 0.23 -0.5 678,065 + SO0654 0.23 -0.8 678,065 + SO0654 0.23 +0.4 678,072 - SO0654 0.25 +0.3 678,073 - SO0654 0.25 +0.7 678,073 - SO0654 0.25 +0.6 678,156 - SO0654 0.40 -0.4 678,159 + SO0654 0.40 +1.4 678,168 + SO0654 0.42 -0.3 678,170 + SO0654 0.42 -0.6 678,178 - SO0654 0.44 +0.1 678,178 - SO0654 0.44 +0.0 678,180 + SO0654 0.44 +0.4 678,180 + SO0654 0.44 -0.0 678,203 + SO0654 0.48 +0.7 678,203 + SO0654 0.48 +0.2 678,203 + SO0654 0.48 -0.1 678,211 - SO0654 0.50 -0.3 678,211 - SO0654 0.50 +0.5 678,211 - SO0654 0.50 +0.3 678,211 - SO0654 0.50 -0.5 678,211 - SO0654 0.50 -0.6 678,211 - SO0654 0.50 -2.2 678,223 + SO0654 0.52 +0.3 678,240 + SO0654 0.55 +0.1 678,243 - SO0654 0.55 -1.3 678,257 + SO0654 0.58 -0.1 678,266 - SO0654 0.59 -0.2 678,286 + SO0654 0.63 -0.8 678,287 - SO0654 0.63 +0.1 678,306 + SO0654 0.67 +0.5 678,306 + SO0654 0.67 +0.2 678,314 - SO0654 0.68 -0.4 678,314 - SO0654 0.68 -0.2 678,322 + SO0654 0.70 +0.8 678,335 + SO0654 0.72 -0.6 678,335 + SO0654 0.72 +0.2 678,348 + SO0654 0.74 +0.0 678,356 + SO0654 0.76 -1.4 678,356 + SO0654 0.76 +0.5 678,356 + SO0654 0.76 -0.0 678,356 + SO0654 0.76 -0.5 678,356 + SO0654 0.76 +0.3 678,356 + SO0654 0.76 -0.1 678,356 + SO0654 0.76 -0.2 678,356 + SO0654 0.76 -0.9 678,364 - SO0654 0.77 +1.6 678,364 - SO0654 0.77 -0.1 678,364 - SO0654 0.77 +0.4 678,364 - SO0654 0.77 +0.2 678,373 + SO0654 0.79 -0.6 678,385 + SO0654 0.81 +0.2 678,385 + SO0654 0.81 -0.3 678,386 + SO0654 0.81 +0.1 678,393 - SO0654 0.82 -0.6 678,393 - SO0654 0.82 +1.0 678,393 - SO0654 0.82 -1.6 678,393 - SO0654 0.82 -2.0 678,393 - SO0654 0.82 +1.4 678,393 - SO0654 0.82 -0.7 678,393 - SO0654 0.82 -1.1 678,393 - SO0654 0.82 +1.6 678,398 + SO0654 0.83 -0.2 678,405 - SO0654 0.84 -0.0 678,411 - SO0654 0.85 -0.5 678,411 - SO0654 0.85 +0.6 678,430 + SO0654 0.89 +1.2 678,437 + -1.0 678,478 - +0.4 678,524 + +0.8 678,532 - +0.3 678,547 + -0.1 678,555 - +0.4 678,610 + SO0655 0.19 -0.3 678,618 - SO0655 0.21 -0.8 678,654 + SO0655 0.29 -0.8 678,655 + SO0655 0.29 -0.7 678,655 + SO0655 0.29 -0.4 678,655 + SO0655 0.29 +0.4 678,655 + SO0655 0.29 -0.1 678,662 - SO0655 0.31 +0.1 678,663 - SO0655 0.31 +0.0 678,691 - SO0655 0.38 -0.1 678,697 - SO0655 0.39 +0.3 678,703 + SO0655 0.40 -0.3 678,704 - SO0655 0.41 -2.4 678,711 - SO0655 0.42 -0.4 678,747 - SO0655 0.51 -0.1 678,759 - SO0655 0.53 +1.0 678,769 + SO0655 0.56 -0.0 678,856 + SO0655 0.76 -0.3 678,911 + SO0655 0.89 -0.6 678,911 + SO0655 0.89 +0.4 678,911 + SO0655 0.89 -0.4 678,918 + -0.0 678,920 + -1.1 678,920 + -0.0 678,944 + +0.6 678,945 - +0.6 678,979 + -0.8 678,979 + +0.7 678,980 + +0.6 678,987 + +4.0 678,987 + +0.2 678,987 + -0.3 678,987 + -0.1 678,987 + +0.1 678,987 + -0.5 678,987 + -0.2 678,987 + -0.2 678,987 + -0.2 678,987 + +0.3 678,987 + +1.6 678,987 + -0.6 678,987 + +0.8 678,987 + +0.4 678,987 + +0.8 678,987 + -0.0 678,987 + -0.0 678,987 + +0.1 678,987 + +0.4 678,987 + +0.7 678,987 + +0.6 678,987 + -1.6 678,987 + +0.3 678,987 + -0.3 678,987 + +0.1 678,987 + -0.1 678,987 + +0.3 678,987 + +0.5 678,987 + +0.6 678,987 + +0.1 678,987 + +0.7 678,987 + +0.1 678,987 + +0.9 678,987 + +0.3 678,987 + +0.9 678,995 - -0.4 678,995 - -0.4 678,995 - -0.6 678,995 - +0.0 678,995 - +0.8 678,995 - -0.3 678,995 - -1.1 678,995 - +0.0 678,995 - -0.1 678,995 - +0.8 678,995 - +0.3 678,995 - -0.1 678,995 - +2.0 678,995 - +0.8 678,995 - -0.0 678,995 - +0.5 678,995 - -0.8 678,995 - -0.1 678,995 - -0.7 678,995 - -0.7 678,995 - +0.2 678,995 - -0.8 678,995 - -0.1 678,995 - -1.2 678,995 - +0.4 678,995 - -0.1 678,995 - -0.8 678,995 - -0.1 678,995 - -1.5 678,995 - +0.2 678,995 - +0.3 678,995 - +0.7 678,995 - -0.5 678,995 - -0.1 678,996 - +0.5 679,001 + -0.3 679,019 - -0.1 679,049 - -1.0 679,049 - -0.3 679,049 - -0.6 679,049 - -1.1 679,049 - -2.4 679,049 - +0.4 679,054 - -0.3 679,054 - -0.6 679,054 - +0.0 679,054 - -1.2 679,054 - +0.7 679,054 - +0.0 679,054 - -0.3 679,054 - -0.1 679,054 - -0.9 679,054 - +0.4 679,054 - -0.3 679,054 - -0.0 679,054 - +0.1 679,054 - -1.7 679,054 - -1.1 679,054 - -0.2 679,054 - +0.2 679,054 - -0.6 679,054 - +0.3 679,055 - +0.2 679,059 - +0.1
Or see this region's nucleotide sequence