Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0586 and SO0587 are separated by 27 nucleotides SO0587 and SO0588 are separated by 15 nucleotides SO0588 and SO_0589 are separated by 68 nucleotides SO_0589 and SO0588.2 are separated by 40 nucleotides SO0588.2 and SO_0590 are separated by 17 nucleotides
SO0586: SO0586 - conserved hypothetical protein (NCBI ptt file), at 612,019 to 612,354
SO0586
SO0587: SO0587 - glycerophosphoryl diester phosphodiesterase, putative (NCBI ptt file), at 612,382 to 613,104
SO0587
SO0588: SO0588 - transporter, putative (NCBI ptt file), at 613,120 to 616,323
SO0588
SO_0589: SO_0589 - no description, at 616,392 to 616,799
_0589
SO0588.2: SO0588.2 - hypothetical permease of the drug/metabolite transporter (DMT) superfamily (NCBI ptt file), at 616,840 to 617,277
SO0588.2
SO_0590: SO_0590 - no description, at 617,295 to 618,032
_0590
Position (kb)
613
614
615
616
617 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 612.237 kb on + strand, within SO0586 at 612.348 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.357 kb on - strand at 612.357 kb on - strand at 612.361 kb on + strand at 612.362 kb on - strand at 612.362 kb on - strand at 612.454 kb on - strand at 612.478 kb on - strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.488 kb on - strand, within SO0587 at 612.505 kb on + strand, within SO0587 at 612.528 kb on + strand, within SO0587 at 612.529 kb on - strand, within SO0587 at 612.564 kb on - strand, within SO0587 at 612.773 kb on + strand, within SO0587 at 612.843 kb on + strand, within SO0587 at 612.850 kb on - strand, within SO0587 at 612.953 kb on + strand, within SO0587 at 612.995 kb on + strand, within SO0587 at 613.194 kb on + strand at 613.351 kb on - strand at 613.351 kb on - strand at 613.397 kb on + strand at 613.454 kb on + strand, within SO0588 at 613.454 kb on + strand, within SO0588 at 613.454 kb on + strand, within SO0588 at 613.455 kb on + strand, within SO0588 at 613.652 kb on - strand, within SO0588 at 613.887 kb on + strand, within SO0588 at 613.928 kb on + strand, within SO0588 at 613.941 kb on + strand, within SO0588 at 613.968 kb on - strand, within SO0588 at 613.985 kb on - strand, within SO0588 at 614.058 kb on + strand, within SO0588 at 614.066 kb on - strand, within SO0588 at 614.121 kb on + strand, within SO0588 at 614.129 kb on - strand, within SO0588 at 614.149 kb on + strand, within SO0588 at 614.180 kb on + strand, within SO0588 at 614.180 kb on + strand, within SO0588 at 614.180 kb on + strand, within SO0588 at 614.188 kb on - strand, within SO0588 at 614.381 kb on - strand, within SO0588 at 614.528 kb on - strand, within SO0588 at 614.637 kb on + strand, within SO0588 at 614.637 kb on + strand, within SO0588 at 614.706 kb on + strand, within SO0588 at 614.767 kb on - strand, within SO0588 at 614.769 kb on - strand, within SO0588 at 614.810 kb on + strand, within SO0588 at 614.817 kb on - strand, within SO0588 at 614.836 kb on - strand, within SO0588 at 614.841 kb on - strand, within SO0588 at 614.853 kb on + strand, within SO0588 at 614.874 kb on + strand, within SO0588 at 614.874 kb on + strand, within SO0588 at 615.201 kb on + strand, within SO0588 at 615.289 kb on - strand, within SO0588 at 615.324 kb on + strand, within SO0588 at 615.340 kb on + strand, within SO0588 at 615.348 kb on - strand, within SO0588 at 615.353 kb on + strand, within SO0588 at 615.390 kb on - strand, within SO0588 at 615.397 kb on - strand, within SO0588 at 615.443 kb on + strand, within SO0588 at 615.483 kb on + strand, within SO0588 at 615.520 kb on - strand, within SO0588 at 615.557 kb on - strand, within SO0588 at 615.606 kb on + strand, within SO0588 at 615.701 kb on - strand, within SO0588 at 615.737 kb on - strand, within SO0588 at 615.747 kb on - strand, within SO0588 at 615.798 kb on + strand, within SO0588 at 615.939 kb on + strand, within SO0588 at 616.063 kb on + strand at 616.087 kb on - strand at 616.134 kb on + strand at 616.239 kb on - strand at 616.358 kb on + strand at 616.435 kb on + strand, within SO_0589 at 616.435 kb on + strand, within SO_0589 at 616.472 kb on + strand, within SO_0589 at 616.533 kb on - strand, within SO_0589 at 616.586 kb on + strand, within SO_0589 at 616.615 kb on + strand, within SO_0589 at 616.641 kb on + strand, within SO_0589 at 616.648 kb on - strand, within SO_0589 at 616.681 kb on + strand, within SO_0589 at 616.813 kb on - strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.824 kb on + strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.832 kb on - strand at 616.837 kb on - strand at 616.869 kb on + strand at 616.869 kb on + strand at 616.995 kb on + strand, within SO0588.2 at 617.013 kb on - strand, within SO0588.2 at 617.042 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.133 kb on + strand, within SO0588.2 at 617.148 kb on + strand, within SO0588.2 at 617.161 kb on - strand, within SO0588.2 at 617.208 kb on - strand, within SO0588.2 at 617.229 kb on - strand, within SO0588.2
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 612,237 + SO0586 0.65 -0.2 612,348 + -0.2 612,349 + -0.1 612,349 + +1.0 612,349 + +1.2 612,349 + -0.1 612,349 + -0.8 612,349 + +0.0 612,349 + -0.7 612,354 + +0.5 612,354 + +0.8 612,354 + -0.0 612,357 - -0.2 612,357 - -1.4 612,361 + +1.1 612,362 - +1.1 612,362 - -0.4 612,454 - -1.2 612,478 - SO0587 0.13 -0.7 612,480 + SO0587 0.14 -0.3 612,480 + SO0587 0.14 -0.7 612,480 + SO0587 0.14 +0.5 612,480 + SO0587 0.14 +0.4 612,488 - SO0587 0.15 -1.3 612,505 + SO0587 0.17 -0.4 612,528 + SO0587 0.20 -0.6 612,529 - SO0587 0.20 +0.3 612,564 - SO0587 0.25 +0.8 612,773 + SO0587 0.54 +0.8 612,843 + SO0587 0.64 -0.4 612,850 - SO0587 0.65 +0.4 612,953 + SO0587 0.79 +0.2 612,995 + SO0587 0.85 +1.0 613,194 + -1.2 613,351 - +1.2 613,351 - -0.4 613,397 + -0.7 613,454 + SO0588 0.10 -1.1 613,454 + SO0588 0.10 -1.1 613,454 + SO0588 0.10 -1.5 613,455 + SO0588 0.10 -1.4 613,652 - SO0588 0.17 +0.2 613,887 + SO0588 0.24 +0.2 613,928 + SO0588 0.25 -1.8 613,941 + SO0588 0.26 -0.6 613,968 - SO0588 0.26 -2.2 613,985 - SO0588 0.27 -0.7 614,058 + SO0588 0.29 -0.5 614,066 - SO0588 0.30 -0.8 614,121 + SO0588 0.31 -0.8 614,129 - SO0588 0.31 -1.6 614,149 + SO0588 0.32 -0.5 614,180 + SO0588 0.33 -1.7 614,180 + SO0588 0.33 -0.6 614,180 + SO0588 0.33 -0.2 614,188 - SO0588 0.33 -0.2 614,381 - SO0588 0.39 -1.5 614,528 - SO0588 0.44 -1.2 614,637 + SO0588 0.47 -0.3 614,637 + SO0588 0.47 +0.2 614,706 + SO0588 0.50 +0.8 614,767 - SO0588 0.51 +0.2 614,769 - SO0588 0.51 -0.3 614,810 + SO0588 0.53 -0.6 614,817 - SO0588 0.53 -1.1 614,836 - SO0588 0.54 -1.0 614,841 - SO0588 0.54 -0.9 614,853 + SO0588 0.54 -0.9 614,874 + SO0588 0.55 -1.0 614,874 + SO0588 0.55 +0.4 615,201 + SO0588 0.65 -1.6 615,289 - SO0588 0.68 -1.5 615,324 + SO0588 0.69 -0.6 615,340 + SO0588 0.69 -0.7 615,348 - SO0588 0.70 -1.0 615,353 + SO0588 0.70 -1.0 615,390 - SO0588 0.71 -1.2 615,397 - SO0588 0.71 -1.0 615,443 + SO0588 0.73 -1.1 615,483 + SO0588 0.74 -0.9 615,520 - SO0588 0.75 -3.1 615,557 - SO0588 0.76 -2.3 615,606 + SO0588 0.78 -2.4 615,701 - SO0588 0.81 -3.4 615,737 - SO0588 0.82 -0.5 615,747 - SO0588 0.82 +1.2 615,798 + SO0588 0.84 -1.1 615,939 + SO0588 0.88 -0.2 616,063 + -0.7 616,087 - +1.0 616,134 + -0.3 616,239 - -0.2 616,358 + +1.8 616,435 + SO_0589 0.11 +1.1 616,435 + SO_0589 0.11 -0.0 616,472 + SO_0589 0.20 +0.3 616,533 - SO_0589 0.35 +1.1 616,586 + SO_0589 0.48 +0.1 616,615 + SO_0589 0.55 -1.0 616,641 + SO_0589 0.61 +1.4 616,648 - SO_0589 0.63 -0.2 616,681 + SO_0589 0.71 +1.2 616,813 - -0.7 616,824 + +0.3 616,824 + +0.3 616,824 + +1.1 616,824 + +0.5 616,832 - -2.0 616,832 - +1.7 616,832 - +0.0 616,832 - +0.1 616,832 - -1.8 616,837 - -0.3 616,869 + -0.6 616,869 + +0.7 616,995 + SO0588.2 0.35 +0.3 617,013 - SO0588.2 0.39 +1.0 617,042 + SO0588.2 0.46 +0.4 617,052 + SO0588.2 0.48 -0.5 617,052 + SO0588.2 0.48 +0.7 617,133 + SO0588.2 0.67 -0.2 617,148 + SO0588.2 0.70 +0.1 617,161 - SO0588.2 0.73 +0.1 617,208 - SO0588.2 0.84 +0.2 617,229 - SO0588.2 0.89 -0.4
Or see this region's nucleotide sequence