Strain Fitness in Shewanella oneidensis MR-1 around SO0588

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0586 and SO0587 are separated by 27 nucleotidesSO0587 and SO0588 are separated by 15 nucleotidesSO0588 and SO_0589 are separated by 68 nucleotidesSO_0589 and SO0588.2 are separated by 40 nucleotidesSO0588.2 and SO_0590 are separated by 17 nucleotides SO0586: SO0586 - conserved hypothetical protein (NCBI ptt file), at 612,019 to 612,354 SO0586 SO0587: SO0587 - glycerophosphoryl diester phosphodiesterase, putative (NCBI ptt file), at 612,382 to 613,104 SO0587 SO0588: SO0588 - transporter, putative (NCBI ptt file), at 613,120 to 616,323 SO0588 SO_0589: SO_0589 - no description, at 616,392 to 616,799 _0589 SO0588.2: SO0588.2 - hypothetical permease of the drug/metabolite transporter (DMT) superfamily (NCBI ptt file), at 616,840 to 617,277 SO0588.2 SO_0590: SO_0590 - no description, at 617,295 to 618,032 _0590 Position (kb) 613 614 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 612.237 kb on + strand, within SO0586at 612.348 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.349 kb on + strandat 612.354 kb on + strandat 612.354 kb on + strandat 612.354 kb on + strandat 612.357 kb on - strandat 612.357 kb on - strandat 612.361 kb on + strandat 612.362 kb on - strandat 612.362 kb on - strandat 612.454 kb on - strandat 612.478 kb on - strand, within SO0587at 612.480 kb on + strand, within SO0587at 612.480 kb on + strand, within SO0587at 612.480 kb on + strand, within SO0587at 612.480 kb on + strand, within SO0587at 612.488 kb on - strand, within SO0587at 612.505 kb on + strand, within SO0587at 612.528 kb on + strand, within SO0587at 612.529 kb on - strand, within SO0587at 612.564 kb on - strand, within SO0587at 612.773 kb on + strand, within SO0587at 612.843 kb on + strand, within SO0587at 612.850 kb on - strand, within SO0587at 612.953 kb on + strand, within SO0587at 612.995 kb on + strand, within SO0587at 613.194 kb on + strandat 613.351 kb on - strandat 613.351 kb on - strandat 613.397 kb on + strandat 613.454 kb on + strand, within SO0588at 613.454 kb on + strand, within SO0588at 613.454 kb on + strand, within SO0588at 613.455 kb on + strand, within SO0588at 613.652 kb on - strand, within SO0588at 613.887 kb on + strand, within SO0588at 613.928 kb on + strand, within SO0588at 613.941 kb on + strand, within SO0588at 613.968 kb on - strand, within SO0588at 613.985 kb on - strand, within SO0588at 614.058 kb on + strand, within SO0588at 614.066 kb on - strand, within SO0588at 614.121 kb on + strand, within SO0588at 614.129 kb on - strand, within SO0588at 614.149 kb on + strand, within SO0588at 614.180 kb on + strand, within SO0588at 614.180 kb on + strand, within SO0588at 614.180 kb on + strand, within SO0588at 614.188 kb on - strand, within SO0588at 614.381 kb on - strand, within SO0588at 614.528 kb on - strand, within SO0588at 614.637 kb on + strand, within SO0588at 614.637 kb on + strand, within SO0588at 614.706 kb on + strand, within SO0588at 614.767 kb on - strand, within SO0588at 614.769 kb on - strand, within SO0588at 614.810 kb on + strand, within SO0588at 614.817 kb on - strand, within SO0588at 614.836 kb on - strand, within SO0588at 614.841 kb on - strand, within SO0588at 614.853 kb on + strand, within SO0588at 614.874 kb on + strand, within SO0588at 614.874 kb on + strand, within SO0588at 615.201 kb on + strand, within SO0588at 615.289 kb on - strand, within SO0588at 615.324 kb on + strand, within SO0588at 615.340 kb on + strand, within SO0588at 615.348 kb on - strand, within SO0588at 615.353 kb on + strand, within SO0588at 615.390 kb on - strand, within SO0588at 615.397 kb on - strand, within SO0588at 615.443 kb on + strand, within SO0588at 615.483 kb on + strand, within SO0588at 615.520 kb on - strand, within SO0588at 615.557 kb on - strand, within SO0588at 615.606 kb on + strand, within SO0588at 615.701 kb on - strand, within SO0588at 615.737 kb on - strand, within SO0588at 615.747 kb on - strand, within SO0588at 615.798 kb on + strand, within SO0588at 615.939 kb on + strand, within SO0588at 616.063 kb on + strandat 616.087 kb on - strandat 616.134 kb on + strandat 616.239 kb on - strandat 616.358 kb on + strandat 616.435 kb on + strand, within SO_0589at 616.435 kb on + strand, within SO_0589at 616.472 kb on + strand, within SO_0589at 616.533 kb on - strand, within SO_0589at 616.586 kb on + strand, within SO_0589at 616.615 kb on + strand, within SO_0589at 616.641 kb on + strand, within SO_0589at 616.648 kb on - strand, within SO_0589at 616.681 kb on + strand, within SO_0589at 616.813 kb on - strandat 616.824 kb on + strandat 616.824 kb on + strandat 616.824 kb on + strandat 616.824 kb on + strandat 616.832 kb on - strandat 616.832 kb on - strandat 616.832 kb on - strandat 616.832 kb on - strandat 616.832 kb on - strandat 616.837 kb on - strandat 616.869 kb on + strandat 616.869 kb on + strandat 616.995 kb on + strand, within SO0588.2at 617.013 kb on - strand, within SO0588.2at 617.042 kb on + strand, within SO0588.2at 617.052 kb on + strand, within SO0588.2at 617.052 kb on + strand, within SO0588.2at 617.133 kb on + strand, within SO0588.2at 617.148 kb on + strand, within SO0588.2at 617.161 kb on - strand, within SO0588.2at 617.208 kb on - strand, within SO0588.2at 617.229 kb on - strand, within SO0588.2

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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612,237 + SO0586 0.65 -0.2
612,348 + -0.2
612,349 + -0.1
612,349 + +1.0
612,349 + +1.2
612,349 + -0.1
612,349 + -0.8
612,349 + +0.0
612,349 + -0.7
612,354 + +0.5
612,354 + +0.8
612,354 + -0.0
612,357 - -0.2
612,357 - -1.4
612,361 + +1.1
612,362 - +1.1
612,362 - -0.4
612,454 - -1.2
612,478 - SO0587 0.13 -0.7
612,480 + SO0587 0.14 -0.3
612,480 + SO0587 0.14 -0.7
612,480 + SO0587 0.14 +0.5
612,480 + SO0587 0.14 +0.4
612,488 - SO0587 0.15 -1.3
612,505 + SO0587 0.17 -0.4
612,528 + SO0587 0.20 -0.6
612,529 - SO0587 0.20 +0.3
612,564 - SO0587 0.25 +0.8
612,773 + SO0587 0.54 +0.8
612,843 + SO0587 0.64 -0.4
612,850 - SO0587 0.65 +0.4
612,953 + SO0587 0.79 +0.2
612,995 + SO0587 0.85 +1.0
613,194 + -1.2
613,351 - +1.2
613,351 - -0.4
613,397 + -0.7
613,454 + SO0588 0.10 -1.1
613,454 + SO0588 0.10 -1.1
613,454 + SO0588 0.10 -1.5
613,455 + SO0588 0.10 -1.4
613,652 - SO0588 0.17 +0.2
613,887 + SO0588 0.24 +0.2
613,928 + SO0588 0.25 -1.8
613,941 + SO0588 0.26 -0.6
613,968 - SO0588 0.26 -2.2
613,985 - SO0588 0.27 -0.7
614,058 + SO0588 0.29 -0.5
614,066 - SO0588 0.30 -0.8
614,121 + SO0588 0.31 -0.8
614,129 - SO0588 0.31 -1.6
614,149 + SO0588 0.32 -0.5
614,180 + SO0588 0.33 -1.7
614,180 + SO0588 0.33 -0.6
614,180 + SO0588 0.33 -0.2
614,188 - SO0588 0.33 -0.2
614,381 - SO0588 0.39 -1.5
614,528 - SO0588 0.44 -1.2
614,637 + SO0588 0.47 -0.3
614,637 + SO0588 0.47 +0.2
614,706 + SO0588 0.50 +0.8
614,767 - SO0588 0.51 +0.2
614,769 - SO0588 0.51 -0.3
614,810 + SO0588 0.53 -0.6
614,817 - SO0588 0.53 -1.1
614,836 - SO0588 0.54 -1.0
614,841 - SO0588 0.54 -0.9
614,853 + SO0588 0.54 -0.9
614,874 + SO0588 0.55 -1.0
614,874 + SO0588 0.55 +0.4
615,201 + SO0588 0.65 -1.6
615,289 - SO0588 0.68 -1.5
615,324 + SO0588 0.69 -0.6
615,340 + SO0588 0.69 -0.7
615,348 - SO0588 0.70 -1.0
615,353 + SO0588 0.70 -1.0
615,390 - SO0588 0.71 -1.2
615,397 - SO0588 0.71 -1.0
615,443 + SO0588 0.73 -1.1
615,483 + SO0588 0.74 -0.9
615,520 - SO0588 0.75 -3.1
615,557 - SO0588 0.76 -2.3
615,606 + SO0588 0.78 -2.4
615,701 - SO0588 0.81 -3.4
615,737 - SO0588 0.82 -0.5
615,747 - SO0588 0.82 +1.2
615,798 + SO0588 0.84 -1.1
615,939 + SO0588 0.88 -0.2
616,063 + -0.7
616,087 - +1.0
616,134 + -0.3
616,239 - -0.2
616,358 + +1.8
616,435 + SO_0589 0.11 +1.1
616,435 + SO_0589 0.11 -0.0
616,472 + SO_0589 0.20 +0.3
616,533 - SO_0589 0.35 +1.1
616,586 + SO_0589 0.48 +0.1
616,615 + SO_0589 0.55 -1.0
616,641 + SO_0589 0.61 +1.4
616,648 - SO_0589 0.63 -0.2
616,681 + SO_0589 0.71 +1.2
616,813 - -0.7
616,824 + +0.3
616,824 + +0.3
616,824 + +1.1
616,824 + +0.5
616,832 - -2.0
616,832 - +1.7
616,832 - +0.0
616,832 - +0.1
616,832 - -1.8
616,837 - -0.3
616,869 + -0.6
616,869 + +0.7
616,995 + SO0588.2 0.35 +0.3
617,013 - SO0588.2 0.39 +1.0
617,042 + SO0588.2 0.46 +0.4
617,052 + SO0588.2 0.48 -0.5
617,052 + SO0588.2 0.48 +0.7
617,133 + SO0588.2 0.67 -0.2
617,148 + SO0588.2 0.70 +0.1
617,161 - SO0588.2 0.73 +0.1
617,208 - SO0588.2 0.84 +0.2
617,229 - SO0588.2 0.89 -0.4

Or see this region's nucleotide sequence